Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2583 ATGGTTCTAGTTCAAATACTGAGTCTGCCGTGCATGACTTTCAAGAAGAAAAGTACATTGATAGCGGGAGGAGTTCATAGAGCCACGGTGGCACTGTCTCACAGAGATGAAAAGTTCGAAGCAGGGGAGGCTAGGATTGCTGCAGGGCTTTGGCAGAGGGACACTGGAAAGCTCTGCGAGCGGTTAAGCCTCACTTCACTTCTTCGTCTTAGAGAGACAAGGCAAGTGGGACAAATGGGCCGCTCCCGAGCCGCGTTGCGCCAAGCTGACGATGACCCCAACCAAAGGTCTAAGAGAAAAAAGGCGGCTCTGAATGCTGAGAATCTAGAAACTTTAAGTACAGGCCATGGGATAAATGAAGGAAAAGCATCTCTTTACCACTGTAATTATTGCAACAAAGATATTTCTGGGAAGATCCGCATGAAGTGCGTCGTATGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGAGCTGAGTTGACACCTCACAAAAGCAATCATTCATATAGAGTCATGGATAATCTATCTTTTCCACTTCTATGTCCAGACTGGAATGCAGATGAAGAGATGCTGCTTCTAGAGGGCCTTGGAATGTATGGATTTGGGAATTGGACTGAAGTAGCAGGATCTGTTGGAACAAAAAGCAAGTCTCAATGTATTGACCACTATAATGCTGTTTATATGAATTCACCATGCTTTCCTCTCCCTGATTTATCACATGTTATGGAAAAGAGCAGAGAGGAGCTTCTTGCTATGGCCAAGGGGTATGGTGAAGTTAATACGGAACTTCCTCCAACTGCAGAGCATACACTGAAAGAGCCTCCTTTCTCTGCAGGAATAAATTCTGAGGAATCTAAAAGGGAAGTATCCACCAATCAAACATTGTCTACCATAATTTCAGGTGCTGATATGGGTACAACTTGTGGCAAAGCTTGCTCAAGTACAATTAAGAAGGCTTCCAATACGAACTGGATTAATGACAGGCTTAAAATGGAGGAATCTCAAGCAGATCGGAGCATTGGAGGGAAAAAACCCAAACTATTTGGGGAAGATGGGCCTTCTGTAACGGAGTTGAGTGGATACAATTTTAAGAGAGAGGAATTTGAGATTGAATATGACAATGATGCAGAACAAGTGTTGGCAGATATGGAATTTAAGGACAATGATACTGAAGCTGAACGCAAAATGAAACTACAAGTGCTTCGTGTTTACTCAAAAAGGTTAGATGAGCGAAAGCGGAGAAAGAATTTTATCCTTGAAAGAAATTTGCTTTATCCTGACCCTTTTGAGAAGTCCCTCTCACCTGAGGAGCTAAAATTATGTCAGCGCTACAAAGTCTTCATGCGGTTTCACTCAAAAGAAGAGCACAAGGAATTGCTCAAATGTATTATTGAAGAACATCGAATTGTCAAAAGAATACAAGATCTACAGGAAGCACGAGCTGCAGGCTGTCACACATCTGCTGAAGCATATAGATTTATTGATCTCAAGAGAACCAAGGAAGTTGAACAAAGTGGCAAGGATTCACCTGCAGCAATACAGGCTATCTCAAGGTCCCTAGACCATTGGGATATCACTGGATTTACAGGGGCCGAGTTACTATCAGAATCTGAAAAAGAGCTTTGTAATGAGATCAGAATTTTACCGTCACACTATCTCAATATGTTACAGATCATGTCAGTAGAAATTTGTAAGGGCAGTGTGACCAAGAAATCTGATGCCTACACCCTGTTCAAGGTAGAACCAAGCAAGGTTGATAGAGTTTATGATATGCTTGTTAAAAAGGGGATTGCTAAAGCGTGA 1809 0.4229 MVLVQILSLPCMTFKKKSTLIAGGVHRATVALSHRDEKFEAGEARIAAGLWQRDTGKLCERLSLTSLLRLRETRQVGQMGRSRAALRQADDDPNQRSKRKKAALNAENLETLSTGHGINEGKASLYHCNYCNKDISGKIRMKCVVCQDFDLCIECFSVGAELTPHKSNHSYRVMDNLSFPLLCPDWNADEEMLLLEGLGMYGFGNWTEVAGSVGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMEKSREELLAMAKGYGEVNTELPPTAEHTLKEPPFSAGINSEESKREVSTNQTLSTIISGADMGTTCGKACSSTIKKASNTNWINDRLKMEESQADRSIGGKKPKLFGEDGPSVTELSGYNFKREEFEIEYDNDAEQVLADMEFKDNDTEAERKMKLQVLRVYSKRLDERKRRKNFILERNLLYPDPFEKSLSPEELKLCQRYKVFMRFHSKEEHKELLKCIIEEHRIVKRIQDLQEARAAGCHTSAEAYRFIDLKRTKEVEQSGKDSPAAIQAISRSLDHWDITGFTGAELLSESEKELCNEIRILPSHYLNMLQIMSVEICKGSVTKKSDAYTLFKVEPSKVDRVYDMLVKKGIAKA 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2583 602 PIRSF Txn_adaptor_ADA2 504 602 IPR016827 GO:0003713|GO:0006357|GO:0035065
Bisa09g2583 602 PIRSF Txn_adaptor_ADA2 113 518 IPR016827 GO:0003713|GO:0006357|GO:0035065
Bisa09g2583 602 SUPERFAMILY RING/U-box 126 189 - -
Bisa09g2583 602 CDD SANT 186 226 IPR001005 -
Bisa09g2583 602 Gene3D - 517 601 IPR036388 -
Bisa09g2583 602 FunFam Transcriptional adapter 2 179 231 - -
Bisa09g2583 602 ProSitePatterns Zinc finger ZZ-type signature. 128 155 IPR000433 GO:0008270
Bisa09g2583 602 FunFam Transcriptional adapter 2 517 601 - -
Bisa09g2583 602 SUPERFAMILY Homeodomain-like 179 232 IPR009057 -
Bisa09g2583 602 ProSiteProfiles SANT domain profile. 181 233 IPR017884 -
Bisa09g2583 602 CDD ZZ_ADA2 126 174 IPR041983 -
Bisa09g2583 602 SUPERFAMILY Homeodomain-like 517 599 IPR009057 -
Bisa09g2583 602 ProSiteProfiles SWIRM domain profile. 516 602 IPR007526 GO:0005515
Bisa09g2583 602 ProSiteProfiles Zinc finger ZZ-type profile. 123 179 IPR000433 GO:0008270
Bisa09g2583 602 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 125 597 - -
Bisa09g2583 602 SMART zz_5 122 166 IPR000433 GO:0008270
Bisa09g2583 602 Pfam Zinc finger, ZZ type 126 165 IPR000433 GO:0008270
Bisa09g2583 602 Gene3D - 181 231 - -
Bisa09g2583 602 Gene3D - 119 174 IPR043145 -
Bisa09g2583 602 MobiDBLite consensus disorder prediction 268 292 - -
Bisa09g2583 602 Pfam Myb-like DNA-binding domain 185 226 IPR001005 -
Bisa09g2583 602 MobiDBLite consensus disorder prediction 79 102 - -
Bisa09g2583 602 FunFam Transcriptional adapter 119 174 - -
Bisa09g2583 602 MobiDBLite consensus disorder prediction 85 102 - -
Bisa09g2583 602 SMART sant 182 231 IPR001005 -
Bisa09g2583 602 ProSiteProfiles Myb-like domain profile. 186 229 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2583 Bisa-ChrBisa09 53264544 53317030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2583 79 600 EF-hand Containing Proteins AT3G07740 54.225 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa09g2583 Myb_DNA-binding 3.5e-09 CL0123