Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2527 ATGGCAAAAGGAGGGACTCTTCTCGTGAGTTCTAAAGCGGAGTTGAAATGGAAGGAGAAACAGAAGAAGAAGGCCAAGTCTGGCTGCTTTGAGTCCTTGGGTCTCAGCCCTAATGTCTACCGAGGAATCAAGCGCAAAGGTTATAAGGTGCCCACTCCAATTCAGAGGAAAACAATGCCCATCATTCTTTCTGGTGCTGACGTTGTTGCCATGGCTCGTACTGGGTCGGGTAAAACCGCTGCATTCCTCATCCCCATGCTTCAGCGTTTGAATCAGCATCTTCCTCAGGGTGGCGTTAGAGCTCTCATTTTGTCCCCCACAAGAGATTTGGCGATTCAGACTTTGAAGTTCACCAAAGAGCTTGGCCGCTTTACAGATCTTCGTGTTAGTTTACTAGTTGGTGGTGATAGTATGGAAAGTCAGTTTGAAGAATTAGCTCAAAATCCTGATATTATAATTGCAACGCCTGGTAGGCTTATGCATCATTTGTCAGAAGTTGATGACATGTCGCTGCGTACTGTGGAATATGTTGTTTTCGATGAGGCAGATTGTTTATTCGGCATGGGTTTTGCTGAGCAGTTACATCAAATTCTTACACAGCTCGGAGAGAACCGTCAGACCTTGCTTTTCAGCGCTACATTACCCAGTGCCCTTGCTGAATTTGCTAAGGCTGGTTTGCGTGACCCTCAGCTTGTTCGACTGGATTTGGAAACTAAAATCAGCCCTGATCTGAAGCTTGCCTTTTTCACCTTGAGGCAGGAAGAAAAATATGCAGCATTACTTTATTTGATTAGGGAGCAAATTAGTTCCGATCAGCAGACACTGATATTTGTGTCCACAAAACATCATGTGGAGTTTCTCAACACATTGTTTAAGGAAGAGGGTATTGAACCATCTGTATCTTATGGTGACATGGATCAAGATGCTCGCAAAATCCATATATCAAAATTCAGGGCAAGGAAGACAATGTTATTGATTGTGACGGATGTTGCTGCTCGGGGCATTGACATTCCATTACTTGATAATGTTATTAATTGGGACTTCCCCCCAAAGCCTAAAATATTTGTTCATCGTGTTGGAAGGGCTGCAAGGGCAGGTCGTACCGGTACTGCCTATTCTTTTCTGACTTTGGAAGATATGCCATACCTTTTGGATCTTCATTTGTTTCTCTCAAAACCAATCAAAGCTGCCCCCACTGAAGAAGAGGTCCTGCAGGATATGGATGGAGTATTTTCCAAAATTGACCAAGCCATAGCAAAAGGAGAAACTGTGTATGGTCGTTTCCCCCAAAAAGTCATTGACCTTGTTTCGGACAGAGTTCGGGAAACCATTGATGCATCTGCAGAACTAACATTGTTGGAGAAAACCTGTCAAAATGCATTTCGATTATATTCAAAGACAAAACCCTTACCTTCAAAGGAGTCTATCAGGAGAGTCAAGGATTTGCCTCGTGAGGGGCTGCATCCAATTTTCAAGAATGTATTGGAAACAGGGGAGTTAATGGCACTTGCTTTTTCGGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTCTGGAGGCTGAAGGTGAAGCAGCTAAATCAAAGCATCTGCATGGGTCTTCTAGTCAATGGGTTGATGTGATGAAGAGAAAAAGAGCCATTCACGAGAATGTTATAAATTTGGTTCATGAGCAGCGTTGTAGGAGTAACGTGGGAAAGGAGGAACTTCAAACGGATATAGTTCCTTCAACAGAGAAAGGGAAAAAAGCTTCTGGTTCGAAGAGAAAGCAACAAAGTTTCAAGGATGAGGATTACTACATAAGTTCAATACCACAAAATCACCACACAGAAGCAGGCCTTTCAGTGAGAGCTAAGGAGGACTTTTCTTCAAATAGATTGGAATCAGCTGTCCTAGATCTAGTTGCAGATGACAGTGCTGGCATTCAGAAACAAAAATCCGTATATCATTGGGATAAGAGGAGTAAAAAGTATATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGGGTGGTACAAAAGTGAAGGCCACCAAGACTGGTATATATAAGAAGTGGAAAGAACGTTCACATAATAAGATAGCTCTTAAGGGGACAGATAATGAAGGTGATTCCCGTGGGTCCTCAAGCTTGGCAGGGTATTCCCGAGGTGGTCCCAGAAAATTTAAAGGCAGCAAGAAGCAGCATTCAGTGCCAAATGCTCATGTGCGTTCAGAAATCAAAGATCTGGAGCAAATTCGAAAGGAGAGGCAGATAAAAGTTAACAGACTTGCTCATTTGAAGAGCAAGTCTTCCAAGAAGGGTAAACAATTTGGTAGAAATGGGAAAAAGGGAAAGGGTGGTGGACATGGAAAAAAAGGAAAGGCTAAGTAA 2391 0.4279 MAKGGTLLVSSKAELKWKEKQKKKAKSGCFESLGLSPNVYRGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLIPMLQRLNQHLPQGGVRALILSPTRDLAIQTLKFTKELGRFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREQISSDQQTLIFVSTKHHVEFLNTLFKEEGIEPSVSYGDMDQDARKIHISKFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFLTLEDMPYLLDLHLFLSKPIKAAPTEEEVLQDMDGVFSKIDQAIAKGETVYGRFPQKVIDLVSDRVRETIDASAELTLLEKTCQNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFKNVLETGELMALAFSEHLKKFRPKQTILEAEGEAAKSKHLHGSSSQWVDVMKRKRAIHENVINLVHEQRCRSNVGKEELQTDIVPSTEKGKKASGSKRKQQSFKDEDYYISSIPQNHHTEAGLSVRAKEDFSSNRLESAVLDLVADDSAGIQKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTEGGTKVKATKTGIYKKWKERSHNKIALKGTDNEGDSRGSSSLAGYSRGGPRKFKGSKKQHSVPNAHVRSEIKDLEQIRKERQIKVNRLAHLKSKSSKKGKQFGRNGKKGKGGGHGKKGKAK 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2527 796 SMART helicmild6 285 366 IPR001650 -
Bisa09g2527 796 SMART ultradead3 47 254 IPR014001 -
Bisa09g2527 796 Gene3D - 247 473 IPR027417 -
Bisa09g2527 796 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 405 IPR001650 -
Bisa09g2527 796 MobiDBLite consensus disorder prediction 738 762 - -
Bisa09g2527 796 Coils Coil 749 769 - -
Bisa09g2527 796 CDD DEADc_DDX54 28 233 IPR033517 -
Bisa09g2527 796 SMART DBP10CT_2 633 695 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Bisa09g2527 796 Pfam DEAD/DEAH box helicase 52 219 IPR011545 GO:0003676|GO:0005524
Bisa09g2527 796 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 56 IPR014014 GO:0003724
Bisa09g2527 796 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 17 698 - -
Bisa09g2527 796 MobiDBLite consensus disorder prediction 567 593 - -
Bisa09g2527 796 Pfam DBP10CT (NUC160) domain 633 694 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Bisa09g2527 796 Pfam Helicase conserved C-terminal domain 255 366 IPR001650 -
Bisa09g2527 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 384 IPR027417 -
Bisa09g2527 796 CDD SF2_C_DEAD 251 375 - -
Bisa09g2527 796 Gene3D - 8 235 IPR027417 -
Bisa09g2527 796 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 232 IPR014001 -
Bisa09g2527 796 MobiDBLite consensus disorder prediction 699 796 - -
Bisa09g2527 796 MobiDBLite consensus disorder prediction 763 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2527 Bisa-ChrBisa09 48873112 48880742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2527 30 399 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 6.90e-59 204