Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2412 ATGTCAAGTAGAGCAACAAACTGGTGTTATGAATGCAATCGGGCAATTGTACTTGTAGGGAGAGATTTCGTTTGCCCTTACTGTGGTGAAGGCTTTGTGCAAGAACTTGATGAGATGCAGAGAAGGCCGCAGCTGGAAGATTTCTATCAAACACCAGACATTTATGACGCTATAAATACTTTTATGGGGAGGAGAGGCTCAGAACCAGGATTTCAGCTTATTGATATAGTTGATAATATCATGAGGCAGAGAATGGCTGGACAAAACCCAAACTTTGATGTTAGAAGGAGATCTGGTTCTTCCCCGGTTCCTGAACAGAGTTGGGGTGTTATTAGTTCTGGTCCTTTTTTAATATTTCATGGACAAGTTCCTGGATTCCCCTCGGCTAATGGTATCCCTAGAGGTGGTCCTAGGCGGCTTGATGTTGGTGACTACTTTATGGGGCCTGGATTGGAAGAACTTATTGAACAGATCACCATGACTGATCGGCATGGTCCGCCCCCTGCCTCACGTTCTTCAATTGATGCAATGCCTACTATTAGGATCACACAAGCACATCTTCGCTCTGACTCACACTGTCCAGTTTGTCAAGACAAATTTGAACTGGGCAGTGAGGCTAGGGCAATGCCATGTAGTCATATTTATCATTCTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCCATTTGCCGTGTTGAGCTGCCACCTCATGGACATGGTAGTTCCCTTGTTGGTCAAAATTTGGGAGGAAGAAATGCCGACAACCGAATAGACAATGATAACTCCAGGGGGAGGGGGAGGGAGCATAACCAGCAGAACCAGGGAAGGAGGAATCCATTATCCTTTTTATGGCCATTTCGGTCTTCGAGCTGA 882 0.4535 MSSRATNWCYECNRAIVLVGRDFVCPYCGEGFVQELDEMQRRPQLEDFYQTPDIYDAINTFMGRRGSEPGFQLIDIVDNIMRQRMAGQNPNFDVRRRSGSSPVPEQSWGVISSGPFLIFHGQVPGFPSANGIPRGGPRRLDVGDYFMGPGLEELIEQITMTDRHGPPPASRSSIDAMPTIRITQAHLRSDSHCPVCQDKFELGSEARAMPCSHIYHSDCIVPWLVQHNSCPICRVELPPHGHGSSLVGQNLGGRNADNRIDNDNSRGRGREHNQQNQGRRNPLSFLWPFRSSS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2412 293 Pfam zinc-ribbon 8 36 IPR039525 GO:0061630
Bisa09g2412 293 CDD RING-H2_RNF126-like 193 234 - -
Bisa09g2412 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 238 - -
Bisa09g2412 293 Pfam Ring finger domain 192 234 IPR001841 -
Bisa09g2412 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 240 IPR013083 -
Bisa09g2412 293 MobiDBLite consensus disorder prediction 259 275 - -
Bisa09g2412 293 SUPERFAMILY RING/U-box 173 239 - -
Bisa09g2412 293 SMART ring_2 193 233 IPR001841 -
Bisa09g2412 293 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Bisa09g2412 293 MobiDBLite consensus disorder prediction 276 293 - -
Bisa09g2412 293 MobiDBLite consensus disorder prediction 244 293 - -
Bisa09g2412 293 FunFam E3 ubiquitin-protein ligase RING1-like 156 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2412 Bisa-ChrBisa09 44667495 44668376 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2412 136 238 C3H Transcription Factor Family AT5G01980 43.810 4.02e-25 102