Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2406 ATGCAGAGAAGGCCGCAGCTGGTAGATTTCTATCAAGCACCGGACATATATGATGCTATAAATGCTTTGATGGGGAGGAGAGGCTCAGAACCAGGATTCCGGCTTATGGATATAGTCGATAACATCATGAGGCAGAGAGTGAATGGACAAAACCCAAACTTTATTGTTCTAGGGAGATCTGGTTCTTCCCCGGTTCCTGAACAGAGTTGGGGTGTTATTGGTTCTGGTCCTTTTTTAATATTTGATGGTCAAGTTCCTGGATTCACCTTGACTAATGGTATCCCTAGAGGTGGTCCCAGGCGGCTTGATGTTGGTGACTACTTTATGGGGCCTGAATTGGAAGAACTTATTGAACAGATCACCATGACTGATCGGCATGGTCCACCCCGAGCCTCACGTTCTTCAATTGAGGCAATGCCTACTGTTAGGATCACACAAGCACATCTTCGCACTGACTCACACTGTCCAGTTTGTCAAGACAAATTTAAACTGGGCACTGAGGCCAGGGCAATGCCATGTAACCATATTTATCATTCTCATTGTATTGTTCCTTGGTTGGTTCACCATAACTCATGTCCGGTTTGCCGTGTTGAGCTGCCACCTCATGGACATGGTAGTTCCCGTGGTAGTCAAAATTTGGGAGGAAGGGAAGCCAACAACCGAATTGACAATGATAACTCCAGGGGGAGGGAGAGGGAGCATAACCAGCAGAACCAGGGAAGAAGGAATCCGTTATCATTTTTATGGCCATTTCGGTCCTCGAGTTCAAACACTAATAATTACGCAGAGACTAGGGGAAACAACTCTTCAACCACTCATCATGACCAGAATCATGGAACAAGTTACAGTGGATGGCCCTTTGATTAA 867 0.4591 MQRRPQLVDFYQAPDIYDAINALMGRRGSEPGFRLMDIVDNIMRQRVNGQNPNFIVLGRSGSSPVPEQSWGVIGSGPFLIFDGQVPGFTLTNGIPRGGPRRLDVGDYFMGPELEELIEQITMTDRHGPPRASRSSIEAMPTVRITQAHLRTDSHCPVCQDKFKLGTEARAMPCNHIYHSHCIVPWLVHHNSCPVCRVELPPHGHGSSRGSQNLGGREANNRIDNDNSRGREREHNQQNQGRRNPLSFLWPFRSSSSNTNNYAETRGNNSSTTHHDQNHGTSYSGWPFD 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2406 288 Pfam Ring finger domain 154 196 IPR001841 -
Bisa09g2406 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 202 IPR013083 -
Bisa09g2406 288 MobiDBLite consensus disorder prediction 221 238 - -
Bisa09g2406 288 SUPERFAMILY RING/U-box 135 202 - -
Bisa09g2406 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 200 - -
Bisa09g2406 288 MobiDBLite consensus disorder prediction 239 288 - -
Bisa09g2406 288 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Bisa09g2406 288 MobiDBLite consensus disorder prediction 205 220 - -
Bisa09g2406 288 MobiDBLite consensus disorder prediction 202 288 - -
Bisa09g2406 288 FunFam E3 ubiquitin-protein ligase RING1-like 118 202 - -
Bisa09g2406 288 CDD RING-H2_RNF126-like 155 196 - -
Bisa09g2406 288 SMART ring_2 155 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2406 Bisa-ChrBisa09 44478320 44479186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2406 98 213 C3H Transcription Factor Family AT5G01980 40.678 1.30e-25 103