Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2404 ATGGATATAGTCGATAATATCATGAGGCAGAGAGTGAATGGACAAAACCCAAACTTTATTGTTCTAGGGAGATCTGGTTCTTCCCCGGTTCCTGAACAGAGTTGGGGTGTTATTGGTTCTGGTCCTTTTTTAATATTTGATGGTCAAGTTCCTGGATTCACCTTGACTAATGGTATCCCTAGAGGTGGTCCCAGGCCGCTTGATGTTGGTGACTACTTTATGGGGCCTGGATTGGAAGAACTTATTGAACAGATCACCATGACTGATCGGCATGGTCCACCCCGAGCCTCACGTTCTTCAATTGATGCAATGCCTACTATTAGGATCACACAAGCACATCTTCGCACTGACTCACACTGTCCTGTTTGTCAAGACAAATTTAAACTGGGCACTGAGGCTAGGGCAATGCCATGTAATCATATTTATCATTCTCATTGTATTGTTCCTTGGTTGGTTCACCATAACTCATGTCCCGTTTGCCGTGTTGAGCTGCCACCTCATGGACATGGTAGTTCCCGTGGTAGTCAAAATTTGGGAGGAAGGGAAGCCAACAACCGAATTGACAATGATAACTCCAGGGGGAGGGAGAGGGAGCATAACCAGCAGAACCAGGGAAGAAGGAATCCGTTATCGTTTTTATGGCCATTTCGATCCTCGAGTTCAAACACTAATAATTACGCAGAGACTAGGGGAAACAACTCTTCAACCACTCATCATGACCAGAATAATGGAACAAGTTACAGTGGATGGCCCTTTGATTGA 762 0.4501 MDIVDNIMRQRVNGQNPNFIVLGRSGSSPVPEQSWGVIGSGPFLIFDGQVPGFTLTNGIPRGGPRPLDVGDYFMGPGLEELIEQITMTDRHGPPRASRSSIDAMPTIRITQAHLRTDSHCPVCQDKFKLGTEARAMPCNHIYHSHCIVPWLVHHNSCPVCRVELPPHGHGSSRGSQNLGGREANNRIDNDNSRGREREHNQQNQGRRNPLSFLWPFRSSSSNTNNYAETRGNNSSTTHHDQNNGTSYSGWPFD 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2404 253 CDD RING-H2_RNF126-like 120 161 - -
Bisa09g2404 253 SMART ring_2 120 160 IPR001841 -
Bisa09g2404 253 FunFam E3 ubiquitin-protein ligase RING1-like 83 167 - -
Bisa09g2404 253 MobiDBLite consensus disorder prediction 167 253 - -
Bisa09g2404 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
Bisa09g2404 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 165 - -
Bisa09g2404 253 MobiDBLite consensus disorder prediction 170 185 - -
Bisa09g2404 253 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Bisa09g2404 253 Pfam Ring finger domain 119 161 IPR001841 -
Bisa09g2404 253 MobiDBLite consensus disorder prediction 186 203 - -
Bisa09g2404 253 MobiDBLite consensus disorder prediction 204 253 - -
Bisa09g2404 253 SUPERFAMILY RING/U-box 100 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2404 Bisa-ChrBisa09 44462504 44463265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2404 64 178 C3H Transcription Factor Family AT5G01980 41.026 5.05e-27 107