Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2336 ATGCCATCGCCTCTTCTCCGGCATCTCCAGTCTCCTCCTTCTTCAGTTCGCTTCAATTTTAGAGGAATCGTTTTCATTCTCTGCAATCCCTTCAATTCGAGAAGCTTACTAGAAGGAATGATTGGAAGGAGAAGAACTAATTTTGTATTGCCTTGCCCCCACCCTACTCGGTTGCATTGGCCTTTAGTCACCGCCAAATTCCAGAGTATTCTCTCTGCTCTCTATCTATCCAAACACATCCAACCCAATAAGCAGCGCGACGATACTCAGCAGCAGAGGTCGGCGTACAGAATGGCGACGATCAGCCTCCGCAAGGGTAACACTCGGCTCCCTCCGGAGGTGAACCGTGTTCTCTACGTTCGGAACCTGCCCTTCAACATCACCAGCGAGGAGATGTACGATATCTTTGGCAAGTACGGGGCGATTCGGCAGATTCGCATCGGCACCAACAAGGACACCCGTGGAACTGCCTTCGTCGTCTACGAGGACATTTACGATGCCAAAACTGCCGTTGATCACCTTTCGGGCTTCAACGTTGCCAATCGTTATTTGATTGTGCTTTATTACCAACAGGCGAAGATGGGTAAGAAGTTTGATCAGAAGAAGAAAGAGGAAGAGATCACTAGGATGCAGGAGAAGTATGGGGTCTCCACCAAAGATAAGTAG 666 0.491 MPSPLLRHLQSPPSSVRFNFRGIVFILCNPFNSRSLLEGMIGRRRTNFVLPCPHPTRLHWPLVTAKFQSILSALYLSKHIQPNKQRDDTQQQRSAYRMATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMGKKFDQKKKEEEITRMQEKYGVSTKDK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2336 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 191 IPR000504 GO:0003723
Bisa09g2336 221 Gene3D - 77 206 IPR012677 -
Bisa09g2336 221 SMART rrm1_1 117 187 IPR000504 GO:0003723
Bisa09g2336 221 FunFam splicing factor 3B subunit 6-like protein 112 215 - -
Bisa09g2336 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 184 IPR000504 GO:0003723
Bisa09g2336 221 SUPERFAMILY RNA-binding domain, RBD 99 198 IPR035979 GO:0003676
Bisa09g2336 221 CDD RRM_SF3B14 114 190 IPR034150 -
Bisa09g2336 221 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 117 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2336 Bisa-ChrBisa09 41613359 41618960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2336 21 214 Eukaryotic Initiation Factors Gene Family AT3G16380 22.843 1.06e-08 52.8