Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa09g2302 | ATGCTTACTTCTCCTTCTTCTTCTTATTCTCTCTCTACATCGTTCTCTCTCTCTTCTGCAACTGATAATCAGATCACAGTACTAGAGATGGCTTTGTGCCGTTGGAATGTGGCAATTTTGGGGTTTAGCAGGGGTTGGAAGCAATTCTTGGATTTGGGAATTGTTTCTGAGATTTCGTTTGTGCCGATGTCACGGACTGATAGAATGGCTTCGGATCTCAGCAGAACTGGTACCGTGGAAAGAGACATTGAGCAGGCCATTACTGCATTGAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCATTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAGGAGAAACACCTTAAACTCAGCCACGTTTCAAGAATTATATCAGGACAACGCACGCCAATTTTTCAAAGATATCCGCGGCCTGAGAAGGAGTACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATATCACGTAGCCATCAACGGAAGTGGAGAACAGAGTCGAGAAGTGATGGTTTTCCATCTGAGGCTAATAGTCCCAGAACATACACTAGAAGAAGTTCCCCTTTACATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGATCACCTTCGCCTTCATAGCCCCTATGAGAGCCCCCCAAAGAATGGTTTGGACAAAGCATTGTCTGATGTGATTTTGTATGCTGTGCCTCCAAAGGGTTTCTTCCCTCCAGATTCTGCTAGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATATTGTACATGGTCACATGAAGGCAATGGCCATGGATGCTTTTAGAGTAAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTTTGGGCGGTGGGAACCACCATGTTGGTCTTGGTGTAAAAATAGATTCTCTACTGCCCAAAGCCTTGGAATCTGCAGTGGTACTCGATGTACAGAACATTGCTTGTGGTGGTCAACATGCTGCATTGGTGACCAAGCAAGGGGAAATTTTCTCATGGGGGGAAGAATCAGGAGGCAGGCTTGGGCATGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGAATCTCTAAGTAATACCAATATCGAACTTGTAGCTTGTGGGGAGTACCATACTTGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTATAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGGCCCTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGTCCATGGCACACGGCTGTTGTTACCTCAGCTGGGCAATTATTTACTTTTGGCGATGGTACATTTGGTGTTCTGGGTCATGGGGACCGAAAAAATGTTTTGATACCAAGGGAGGTAGAGTCCCTCAAGGGTCTTCGCACTGTGAGGGCTGCTTGTGGTGTTTGGCATTCTGCTGCAGTTGTGGAAGTCATGGTTGGAAACTCAAGTTCCAGCAACTGCTCTTCTGGAAAGCTTTTTACTTGGGGTGATGGGGACAAAGGTCGACTTGGGCATGGTGATAAGGAAACAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAACCTAACTTTTGTCAAGTTGCATGTGGACATAGTCTGACTGTTGCACTTACTACCTCAGGCCATGTCTATACTATGGGTAGTCCTGTCTATGGTCAATTAGGAAATTTTCAAGCCGATGGGAAGTTACCAACACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTTGCTGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGTAAGGGTGCCAATGGTCGTTTAGGCCATGGGGATACAGAGGATCTAAATACTCCAACATTAGTGGAAGGTCTCAAAGACAAACAAGTCAAAAGTATTGCCTGTGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGCTGCCGCCTGCCTTTTAATTTCAAACGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTATAATAAACTAAGGAAAACTATTGAAACTGATTCTTCATCCCATTTTTCTGTGAGCAAAAGAGGAAGTATCAATCAGGGGCCACTTGAGTTTAATGATAAGGATGATAAGTTTGATTCCAGATCTCGTAATCAGCTTGCTAGGTTTTCTTCTATGGAATCCTTGAAGCAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTTAACAGTAGTCGTGTCTCACCCATTCCAAATGGTGGTTCCCAGTGGGGAGCATTAAATGTTTCTAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAGTTTTTCTCAGCCTCCGTTCCAGGTTCTAGAATTGTTTCTCGAGCAACATCCCCAATATCTAGACATCCTAGTCCACCTCGTTCAACGACTCCAACCCCAACACTTGGAGGACTTACCTCCCCAAAGATAGTTGTGGATGATGTTAAGAGGACAAACGAGAGCCTTAGCCAGGAGATTATTAAATTAAGAGCACAGGTGGAAAATTTGACTCGCAAAACTCAACTTCAAGAGATTGAGTTGGAAAGAGCAACTAAACAGCTGAAGGAAGCATTAGCATATGCTGGTGAAGAAACTACTAAGTGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACAGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCATCTAAGAATGTCAAATCACCTTCTCTTGCTTCCTTTGGATCAAATCCTGGTTCCAATGAAGTCAGCAATTCTTCTATTGATGGATTAAATATTCAAGCGACTAGCCTAGAACCAGACTTAGCAGCATTAAGCAACCAATTACTTTCAAATGGTTCAAGCACTCTCAGTAACCGAAGTGCAGGTCACAACAAACAGAGCCAATCAGATGCAACAAATAGAAATGGGAGCAGAACAAAGGAAAATGAGTCTCGTAATGAGACTGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACACTCACCTCCCTCCCAGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAGCAAGCAGAACAATGGTGGGCTGAGAATCGAGCGAGAGTATATGAGCGGTACAATGTGCGCATGGCTGACAAGTCAACTGTTGGTGTTGGAAGTGAGGACCTGGCTCATTGA | 3504 | 0.4364 | MLTSPSSSYSLSTSFSLSSATDNQITVLEMALCRWNVAILGFSRGWKQFLDLGIVSEISFVPMSRTDRMASDLSRTGTVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHQRKWRTESRSDGFPSEANSPRTYTRRSSPLHSPFGSNESLQKDSDHLRLHSPYESPPKNGLDKALSDVILYAVPPKGFFPPDSASGSVHSVSSGGSDIVHGHMKAMAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHHVGLGVKIDSLLPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKNVLIPREVESLKGLRTVRAACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKETKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNFQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTEDLNTPTLVEGLKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKTIETDSSSHFSVSKRGSINQGPLEFNDKDDKFDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPIPNGGSQWGALNVSKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRHPSPPRSTTPTPTLGGLTSPKIVVDDVKRTNESLSQEIIKLRAQVENLTRKTQLQEIELERATKQLKEALAYAGEETTKCKAAKEVIKSLTAQLKDMAERLPVGASKNVKSPSLASFGSNPGSNEVSNSSIDGLNIQATSLEPDLAALSNQLLSNGSSTLSNRSAGHNKQSQSDATNRNGSRTKENESRNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYERYNVRMADKSTVGVGSEDLAH | 1167 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa09g2302 | 1167 | SMART | fyve_4 | 714 | 783 | IPR000306 | GO:0046872 | |
| Bisa09g2302 | 1167 | Pfam | Transcription factor BRX N-terminal domain | 977 | 1010 | IPR027988 | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | BRX domain profile. | 1094 | 1149 | IPR013591 | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 664 | 715 | IPR000408 | - | |
| Bisa09g2302 | 1167 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 375 | 385 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Coils | Coil | 982 | 1002 | - | - | |
| Bisa09g2302 | 1167 | Gene3D | - | 81 | 199 | IPR011993 | - | |
| Bisa09g2302 | 1167 | CDD | FYVE_like_SF | 725 | 778 | - | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 441 | 495 | IPR000408 | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 720 | 782 | IPR017455 | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 560 | 611 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Coils | Coil | 926 | 967 | - | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 205 | 234 | - | - | |
| Bisa09g2302 | 1167 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 550 | 721 | - | - | |
| Bisa09g2302 | 1167 | Pfam | Unstructured region between BRX_N and BRX domain | 1018 | 1087 | - | - | |
| Bisa09g2302 | 1167 | SUPERFAMILY | FYVE/PHD zinc finger | 716 | 787 | IPR011011 | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 199 | 254 | - | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 1059 | 1081 | - | - | |
| Bisa09g2302 | 1167 | CDD | PH_PLC_plant-like | 81 | 191 | - | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 389 | 440 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 496 | 544 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 559 | 608 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 665 | 712 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 440 | 492 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 389 | 437 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 611 | 660 | IPR000408 | - | |
| Bisa09g2302 | 1167 | SUPERFAMILY | PH domain-like | 82 | 190 | - | - | |
| Bisa09g2302 | 1167 | SUPERFAMILY | RCC1/BLIP-II | 328 | 717 | IPR009091 | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 895 | 922 | - | - | |
| Bisa09g2302 | 1167 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 482 | 492 | IPR000408 | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 329 | 388 | IPR000408 | - | |
| Bisa09g2302 | 1167 | Pfam | FYVE zinc finger | 716 | 782 | IPR000306 | GO:0046872 | |
| Bisa09g2302 | 1167 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 722 | 790 | - | - | |
| Bisa09g2302 | 1167 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 300 | 549 | - | - | |
| Bisa09g2302 | 1167 | Gene3D | - | 557 | 727 | IPR009091 | - | |
| Bisa09g2302 | 1167 | PRINTS | Chromosome condensation regulator RCC1 signature | 659 | 680 | IPR000408 | - | |
| Bisa09g2302 | 1167 | PRINTS | Chromosome condensation regulator RCC1 signature | 372 | 385 | IPR000408 | - | |
| Bisa09g2302 | 1167 | PRINTS | Chromosome condensation regulator RCC1 signature | 391 | 407 | IPR000408 | - | |
| Bisa09g2302 | 1167 | PRINTS | Chromosome condensation regulator RCC1 signature | 441 | 457 | IPR000408 | - | |
| Bisa09g2302 | 1167 | PRINTS | Chromosome condensation regulator RCC1 signature | 498 | 512 | IPR000408 | - | |
| Bisa09g2302 | 1167 | PRINTS | Chromosome condensation regulator RCC1 signature | 482 | 498 | IPR000408 | - | |
| Bisa09g2302 | 1167 | PRINTS | Chromosome condensation regulator RCC1 signature | 601 | 619 | IPR000408 | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 826 | 862 | - | - | |
| Bisa09g2302 | 1167 | Pfam | Pleckstrin homology domain | 84 | 190 | IPR001849 | - | |
| Bisa09g2302 | 1167 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 728 | 789 | IPR013083 | - | |
| Bisa09g2302 | 1167 | Gene3D | - | 293 | 450 | IPR009091 | - | |
| Bisa09g2302 | 1167 | Gene3D | - | 451 | 554 | IPR009091 | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 496 | 547 | IPR000408 | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 1010 | 1030 | - | - | |
| Bisa09g2302 | 1167 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1093 | 1148 | IPR013591 | - | |
| Bisa09g2302 | 1167 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 612 | 663 | IPR000408 | - | |
| Bisa09g2302 | 1167 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 126 | 1002 | - | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 1059 | 1098 | - | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 1082 | 1098 | - | - | |
| Bisa09g2302 | 1167 | MobiDBLite | consensus disorder prediction | 1011 | 1030 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa09g2302 | Bisa-ChrBisa09 | 40630799 | 40641706 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa09g2302 | 986 | 1158 | Major Intrinsic Protein MIP | AT1G31880 | 32.461 | 4.43e-16 | 79.7 |