Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2248 ATGAATAATAGCTTTCCTGGTTGGAATTTCGAGAGTGACGCTTGTTTCACCAATCAGAAGAAGCCCCTAGGGCCAGACCAAGAGCTCATGGAGCTCCTATGGAAAAATGGACAGGTCGTTTTGCACAGCCAAACACAAAGGAAGCCGAATGTGAATTCTACTGGTTCAAAACTGTTTCAGAAAAATGATCAATCAACAATCAAGGCAAGTGAATCATATGGGAACTCAAGTAACTTGATTCATGAAGATGATACAGTCTCATGGATCCAATACCCAGTTGAGGATCCACTGGAACAAGAATTCTGTTCAAACTTTTTATCTGAGCTGCCATCCTGTGCAGTTGAGTCTGCTAAGCCAATCAGGCAATTTGAAGAAGGAAATTACGCCAAATTTAGCACCAACAATGCCCCTCTTGTGACTGCAAACTCACAAACACCAAATATGAAACCCACTTGTGCTCAGGAATTCTCAGAAAATCCTATGCCTGCTCCAAGATTTCAAGTTCCCCATTCACATCAGAAAAACATTAATTTTGGTGGATTACAAAAAGTCCTCAATTTTTCTCATTTTTCAGCAGCCCCCAAGGTAGCTTCAGAATCTTCTAATGCACATTTTGAAGAGAACGGTAGCAGTAGTGGTAAACTACTGCAAAGTGAGGCCAGAGAGCGCTCAATGATGACAGTTGGTTCAAGTCACTGTGGCAGTAACCAAGTTCCCCAAGACCCAGATGTAAGCAGGGTATCAAGCACTGGTGTTTGGACTACTACTTTATATGCTGAGACTGAAACCTTCAGGGATGATGTCCAGAAATCAATTCCTCAAAGTGACAAAGGGAAATCAGAGGCGCTTGAACCAACTTTGACTTCATCATCTGATGGCTCAGGTAGTCTTGCAAAATCTTGCTCCAGGTCTACAAGAAACCATAGCCAAAAGAGGAAAAAGACTGATGCTGACGAATCAGAGGAACAAAGTGAGGCCACAGAACGCAAATCAGCTGTTGAAAACAAGGTAGCTAAGCAGACAGGATCTTTGCGAAGGAACCGTGCGGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAGGGAATTGCAACAACTCATACCTCACAGTAACAAGACAGACAAAGCATCAATGCTAGATGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGATGATCTGGATGGGAACTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCCCAAATGGGCGTGGGAATGGCTGTTCCTTCTTTTCCCCCTATTCACAATCTGATGCAATTTACGAGAGCATCACTTGATCAGCCCATATCTGTGGCTCAGACACAAAATCAGACTGTAATGCGTCAAACTCCCGTTTTGGATCCCTTTACTTATCAAAGTCAGATGCAAAATCAAGCTCTTTCAGAGCAATATGCACGTTACATGGGGTATCATCTCATGCATAGTGCCTCCCAGGCGGTACAACAAAGTCAAACAATGATTCCACCGAGCAGTAGCAGTGGAGCTGCAAATATTGATGACAATGTAACTGGCAAGATGGGTTAA 1593 0.4294 MNNSFPGWNFESDACFTNQKKPLGPDQELMELLWKNGQVVLHSQTQRKPNVNSTGSKLFQKNDQSTIKASESYGNSSNLIHEDDTVSWIQYPVEDPLEQEFCSNFLSELPSCAVESAKPIRQFEEGNYAKFSTNNAPLVTANSQTPNMKPTCAQEFSENPMPAPRFQVPHSHQKNINFGGLQKVLNFSHFSAAPKVASESSNAHFEENGSSSGKLLQSEARERSMMTVGSSHCGSNQVPQDPDVSRVSSTGVWTTTLYAETETFRDDVQKSIPQSDKGKSEALEPTLTSSSDGSGSLAKSCSRSTRNHSQKRKKTDADESEEQSEATERKSAVENKVAKQTGSLRRNRAAEVHNLSERRRRDRINEKMRELQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQMIWMGTGMAPMMFPGIQHYMSQMGVGMAVPSFPPIHNLMQFTRASLDQPISVAQTQNQTVMRQTPVLDPFTYQSQMQNQALSEQYARYMGYHLMHSASQAVQQSQTMIPPSSSSGAANIDDNVTGKMG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2248 530 CDD bHLH_AtPIF_like 348 411 IPR047265 -
Bisa09g2248 530 MobiDBLite consensus disorder prediction 281 304 - -
Bisa09g2248 530 MobiDBLite consensus disorder prediction 267 363 - -
Bisa09g2248 530 SMART finulus 354 403 IPR011598 GO:0046983
Bisa09g2248 530 Coils Coil 354 374 - -
Bisa09g2248 530 Gene3D - 344 404 IPR036638 GO:0046983
Bisa09g2248 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Bisa09g2248 530 MobiDBLite consensus disorder prediction 220 248 - -
Bisa09g2248 530 FunFam Basic helix-loop-helix transcription factor 343 406 - -
Bisa09g2248 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 412 IPR036638 GO:0046983
Bisa09g2248 530 Pfam Helix-loop-helix DNA-binding domain 352 398 IPR011598 GO:0046983
Bisa09g2248 530 PANTHER TRANSCRIPTION FACTOR PIF3 18 506 IPR044273 GO:0003700|GO:0006355
Bisa09g2248 530 MobiDBLite consensus disorder prediction 44 63 - -
Bisa09g2248 530 MobiDBLite consensus disorder prediction 311 335 - -
Bisa09g2248 530 MobiDBLite consensus disorder prediction 509 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2248 Bisa-ChrBisa09 37251158 37254711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2248 1 98 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 34.579 1.51e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa09g2248 HLH 6.4e-15 No_clan