Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2238 ATGGATAATACAAACGAAGCATCATCGTCCTTGAGTTTTGCATCATCCTACTTATCAAACGGGTCTAGTAATCACAACATATCTGCCTCCACCAGTAATGAGCATGTGGCAAATCTTGAAAATTTGAGTCTAAGTAAGCTCAGTGGAAGCCTTGAGAAACTATTAATTGATGCTGAATATGACTATAGTGATGCGGAGATTGAAGTTGAGGGGATTTCTGTAGGTGTTCATAGGTGTATATTGGCTTCACGTAGTCAGTTTTTTCATGAACTTTTTAAGAAGGGAAATGATGGTTCAGTGAAGGAAGGTAAGCCAAAGTATCTCATGTCTGAACTGGTGCCTTATGGGGTAGTTGGATATTTAGCCTTCCTTGTTTTCTTGCATTATTTGTATACTGGAAAGCTAAAGGTGTCACCACCAGAAGTATCAACATGTGTTGATGAAGCATGTGCCCATGATGCATGCCGCCCTGCTATTAATTATGCTTTAGAACTGATGTATGCTTCTGCCACATTTCAGATGAAAGAGCTCGTTCTACTTGTTCAGCGGCGACTCCTCAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTGATTCCAATTCTTATGACTGCTTTCCACTGCCAACTAAACGAGCTTCTCTCACACTGCATTCAACGAATAGCAAGGTCGGACCTTGACAACACAACTTTGGATAAAGAGCTCTCACAAGAAGTTGTGAGTGAAATCAAATCACTCCGAGTCAAATCGCTTCCAGAACCTACACCTGATGCAATGGAAGTGGAACCTTTGAATGCAAAATGTATCAGAAGAATCCATAAAGCATTGGACTCTGATGATGTTGAGCTAATGAAGCTTCTTTTGAATGAGTCTAGTGTCACTCTAGATGATGCTTATGCCCTACACTATGCCTGTGCATATTGTGACTCTAAGGTTGTTCAAGAGGTACTTAATTTAGGGTGGGCTGATATTAACCGTAGCAATCCCCGAGGATACACGGTTCTTCATGTGGCTGCAAGGCGAAAAGATCTAACAATCTTAGTAGCGCTGTTGAATAAGGGGGCCCGTGCTTCAGATACCACATCAGATGGACAAACTGCTGTTGCAATTTGTCGGAGGTTGACAAGACCTAAGGATTATAATGAGATAGAAGTGCAGGGGAAGGAATCTAACAAAGACAAGCTATGTGTTGATGTCCTGGAGAGAGAGATGAGAAGAAATTCAATGTCTGTGAATGCGTCAGTTTCTTCACAATTGACTGCTGATGATTTGCACATTAGACTTGATTACCTGGAAAATAGAGTGGATTTCGCTAGGCTGCTGTTTCCTGCTGAGGCTAAGGTAGCCATGGATAATGCAGAGGCAGAGTCGACACTACTCTATGGAAGCTCTTTGGCCAACGTAAGAGAAGTTGATCTGAATGAAACTCCCTCTGTGCGAACCAGAAAGCTCCAGTTAAGATTGCATGCCCTTCAGAAAACAGTTGAGAATGGCCGGCGCTTCTTTCCCCATTGCTCTGAGGTTCTTGATAAGTTTCTTGAAGACGATATGCCTGATGCTTTCTTCCTAGACAGGGGCACTGAAGATGAGCAGCGAATCAAGAAATTACGCTTCATGGAACTTAAAGAGGACGTGCAGAGGGCATTTCATAAGGATATGGCTGAAAACAATGGTGCAGGTTTCTCATCCTCAGTTTCCTCCTCCTCATCCTCATCTCCTAGGAAAGGTCTGAACCAACGACTGAGGAAAAAGTGA 1752 0.4269 MDNTNEASSSLSFASSYLSNGSSNHNISASTSNEHVANLENLSLSKLSGSLEKLLIDAEYDYSDAEIEVEGISVGVHRCILASRSQFFHELFKKGNDGSVKEGKPKYLMSELVPYGVVGYLAFLVFLHYLYTGKLKVSPPEVSTCVDEACAHDACRPAINYALELMYASATFQMKELVLLVQRRLLNFVEKALVEDVIPILMTAFHCQLNELLSHCIQRIARSDLDNTTLDKELSQEVVSEIKSLRVKSLPEPTPDAMEVEPLNAKCIRRIHKALDSDDVELMKLLLNESSVTLDDAYALHYACAYCDSKVVQEVLNLGWADINRSNPRGYTVLHVAARRKDLTILVALLNKGARASDTTSDGQTAVAICRRLTRPKDYNEIEVQGKESNKDKLCVDVLEREMRRNSMSVNASVSSQLTADDLHIRLDYLENRVDFARLLFPAEAKVAMDNAEAESTLLYGSSLANVREVDLNETPSVRTRKLQLRLHALQKTVENGRRFFPHCSEVLDKFLEDDMPDAFFLDRGTEDEQRIKKLRFMELKEDVQRAFHKDMAENNGAGFSSSVSSSSSSSPRKGLNQRLRKK 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2238 583 Gene3D - 243 468 IPR036770 -
Bisa09g2238 583 MobiDBLite consensus disorder prediction 556 575 - -
Bisa09g2238 583 Pfam Ankyrin repeats (3 copies) 272 356 IPR002110 GO:0005515
Bisa09g2238 583 ProSiteProfiles Ankyrin repeat profile. 329 361 IPR002110 GO:0005515
Bisa09g2238 583 FunFam regulatory protein NPR3-like 263 403 - -
Bisa09g2238 583 Gene3D Potassium Channel Kv1.1; Chain A 26 222 IPR011333 -
Bisa09g2238 583 Pfam NPR1/NIM1 like defence protein C terminal 371 567 IPR021094 -
Bisa09g2238 583 Pfam BTB/POZ domain 60 158 IPR000210 GO:0005515
Bisa09g2238 583 SUPERFAMILY Ankyrin repeat 264 373 IPR036770 -
Bisa09g2238 583 CDD BTB_POZ_NPR_plant 52 176 - -
Bisa09g2238 583 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Bisa09g2238 583 SMART BTB_4 63 189 IPR000210 GO:0005515
Bisa09g2238 583 PANTHER REGULATORY PROTEIN NPR3 20 573 IPR044292 GO:0009862|GO:2000022|GO:2000031
Bisa09g2238 583 SMART ANK_2a 266 294 IPR002110 GO:0005515
Bisa09g2238 583 SMART ANK_2a 295 325 IPR002110 GO:0005515
Bisa09g2238 583 SMART ANK_2a 329 358 IPR002110 GO:0005515
Bisa09g2238 583 SUPERFAMILY POZ domain 50 187 IPR011333 -
Bisa09g2238 583 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Bisa09g2238 583 MobiDBLite consensus disorder prediction 551 583 - -
Bisa09g2238 583 FunFam Regulatory protein NPR3 37 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2238 Bisa-ChrBisa09 36907434 36914018 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bisa09g2238 NPR1_like_C 3.3e-81 No_clan