Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2200 ATGGACAAACATTCCAGAGATTCTGGGTCAAATCATGGTGCTGCAGGGCCTGCAGGTCCATATGAGATTTCCTCAATTCATGGTTCTAAAAGAATGGAAAGTAGTGCATGGAGTATACCACATGAGACTGATGCATATCATGGATCCAGCGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATAAAAAGTTAACTATTGCTGGTTCAGAGCATTATGATCAATCTATTGATGACAAGTTTCTACCATTAAACAATTGCAAGGAAGTCGAGGGGCATGATCCTTTTGATGATGTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGACTTATTAGCTGGGATAATGGATGACTTTGACCTTAGTAGGTTGCCCAGCCAACTGGAGGATCTGGATGACAATGATCTGTTTGGTAGTGGAGGAGGGTTTGAAATGGATTTTGAGCCCCAAGAGAGACTTAGTTTTGGTATGTCAAGGATAAGCATATCTGATGGAGTTTCTACAAATGGTACTATTGGTCATTATGCACTTCCAAATGGCGTTGGAACAGTGGCTGGGGAGCATCCATATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATTAACAGCAATGTTGAGGACAATGAATTGAGATCACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTAGAGCTGCTCGCACTGCCATGCGTGCTTTACAGAACAAGCCCCTGAGAAGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCCAACGATGACCTTCGTCAAATATTTGGTGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACACCATAAGTTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAATCATTAAATAGAAGTGACATTGCTGGGAAGCGCATCAAACTTGAACCTAGCCGGCCTGGTGGAGCACGTCGAAATTTAATGCAACAGCTGAGCCAAGAGCTGGAACAGGATGAAGCTTGGAATTTTATACATCAAGTGGGTTCACCAATCGCCAATTCTCCTCCTGGTAACTGGGCTCAATTTGGCAGTCCAGTTGAAAATAATCCCTTAGGTTCTTTCCACAAGTTACCTGGTTTGGGTCATTCCAGCCCCAATGGCAACCAATTGCCTGGATTGACCACAGTTCTTTCCCCACATGCATCAACCTCTGCAAAGATCGCGCCTATTGGCAAGGACACGGGAAGTGTTAGTGACACAAATCAGATATTTACAGATCCTGAATCAAAACAGGGTGTACCTTTTCAGCATTCACTGTCCTTTCCTGAACAAAAAGTAAATGCATTTCCTAGATCGATATCCACTCTTGGAGAGTTAAATTCAAGCTCATCAAGCCTTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACACCTTACAAAGAGCATTCAAATACATCGTCTTGGTCTTCATATTCCATGGGTCTCCCATATAAATCTAATGGCCAGAGGCAAGTTTTCCCATATACTGGTCAGCCTGGTTCAGTTCTTGGTTCCCACCCCCATCATCATGTAGGCTCTGCTCCATCTGGTCTTCCTCTTGATAGGCATTTTAACTACTTTCCTGAGTCTCCAGAAGCTTCTTTCATGCACCCAGCTGCATTTGGGAGTTTAAATCACCGTGATGGAAATCTTATGAACATGGGTGCTCGTGGACCTATGGGTGTTGGCCTCTCAGGAAATGCAACTGATATTGGTTCACCCAGTTTCAGAATGATGCCAGTGCCTAGGCATGGTTCTTTTTTCCTTGGAAATGGTTCCTATTCTGGATCAGGAGTGACTAACTATGAGGGATTGGCTGAACGTGGAAGAAGTCGGCGACTTGAAAACAGTGGGAACCTAATTGATAGCAAGAAGCCGTATCAGCTTGATCTGGACAAAATTATCAGCGGGGAAGATCCAAGGACTACTTTGATGCTTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTTCTGGATGCAATTGATGAGAATCACAAGGGTACTTATGACTTTCTATACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCGCACATCGTCCTCTTCTATAAGGAATTTAATGGGAAGAAGTGGGAGAAGTTCAATAGTGAAAAAGTTGCTTCCCTGGCTTATGCACGAATCCAGGGAAAGGCTGCATTGGTGATGCACTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGCCGGCCAATTCTCTTCCATTCAGAGGGCCAAGAGACCAGTGACCAGGAATCTCTCCTATCCAGCAATTTGAATGTGTGCATTCTCCAACCAGATGGGTCGTACACAGGTGATTTGTTGGACAGCCCAAACGACAATAAAGATGAAAAGTTTGGACAATAA 2568 0.4256 MDKHSRDSGSNHGAAGPAGPYEISSIHGSKRMESSAWSIPHETDAYHGSSDVSLFSSSLPVLPHKKLTIAGSEHYDQSIDDKFLPLNNCKEVEGHDPFDDVETNAIGNMLPDDEDLLAGIMDDFDLSRLPSQLEDLDDNDLFGSGGGFEMDFEPQERLSFGMSRISISDGVSTNGTIGHYALPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDNELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKSLNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEAWNFIHQVGSPIANSPPGNWAQFGSPVENNPLGSFHKLPGLGHSSPNGNQLPGLTTVLSPHASTSAKIAPIGKDTGSVSDTNQIFTDPESKQGVPFQHSLSFPEQKVNAFPRSISTLGELNSSSSSLGTLSGPQFLWGSPTPYKEHSNTSSWSSYSMGLPYKSNGQRQVFPYTGQPGSVLGSHPHHHVGSAPSGLPLDRHFNYFPESPEASFMHPAAFGSLNHRDGNLMNMGARGPMGVGLSGNATDIGSPSFRMMPVPRHGSFFLGNGSYSGSGVTNYEGLAERGRSRRLENSGNLIDSKKPYQLDLDKIISGEDPRTTLMLKNIPNKYTSKMLLDAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVLFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQETSDQESLLSSNLNVCILQPDGSYTGDLLDSPNDNKDEKFGQ 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2200 855 PANTHER RNA RECOGNITION MOTIF-CONTAINING 29 814 - -
Bisa09g2200 855 SUPERFAMILY RNA-binding domain, RBD 698 783 IPR035979 GO:0003676
Bisa09g2200 855 CDD RRM2_MEI2_like 285 355 - -
Bisa09g2200 855 MobiDBLite consensus disorder prediction 1 27 - -
Bisa09g2200 855 FunFam MEI2-like protein 5 isoform 2 190 284 - -
Bisa09g2200 855 Gene3D - 190 284 IPR012677 -
Bisa09g2200 855 FunFam Protein MEI2-like 1 285 380 - -
Bisa09g2200 855 SUPERFAMILY RNA-binding domain, RBD 198 361 IPR035979 GO:0003676
Bisa09g2200 855 Pfam RNA recognition motif 2 696 792 IPR007201 -
Bisa09g2200 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Bisa09g2200 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Bisa09g2200 855 CDD RRM1_MEI2_like 200 276 IPR034453 -
Bisa09g2200 855 Gene3D - 285 380 IPR012677 -
Bisa09g2200 855 SMART rrm1_1 202 270 IPR000504 GO:0003723
Bisa09g2200 855 SMART rrm1_1 287 355 IPR000504 GO:0003723
Bisa09g2200 855 SMART rrm1_1 698 774 IPR000504 GO:0003723
Bisa09g2200 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 353 IPR000504 GO:0003723
Bisa09g2200 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Bisa09g2200 855 CDD RRM3_MEI2_like 699 784 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2200 Bisa-ChrBisa09 35943701 35951302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2200 196 372 Eukaryotic Initiation Factors Gene Family AT3G16380 25.253 8.92e-11 63.5