Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2184 ATGGGATCGAGCTCTCAGAAGAAGACAGGAAGAGGGAAGATAGAGATAAAGAGGATCGAGAACACTACCAACAGGCAAGTCACCTTCTGCAAGAGACGCAATGGCTTGCTCAAGAAAGCCTATGAGTTGTCTGTTCTCTGTGATGCTGAAGTCGCTCTCGTCGTCTTCTCTACCCGAGGTCGCTTGTACGAGTATGCCAATAACAGTGTCAGAGCAACAATTGAAAGGTACAAGAAGGCATGCGCTGCTTCGTCAAACACTGAATCTCTATCTGAAGCTAACACTCAGTTTTACCAGCAAGAATCAACCAAGTTAAGAAGGCAGATACATGAGATTCAGAATTTAAACAGGCACATCCTTGGTGAAGCTCTGAGCTCTTTGAGTCTCAAGGAACTAAAAAACCTAGAGGGTAGATTGGAGAAAGGCTTAAGCAGAGTTAGATCTAGAAAGCACGAAACGTTGTTTGCTGAAGTCGAGTTCATGCAAAAGCGGGAAATCGAGCTGCAAAATCATAATAATTATCTCCGAACAAAGATAGCAGAACATGAGAGAGCACAAACAAACATGATGCAGGGAAATGGAAGTAGCACTGTGTGTGAATCCATACCTTCACAATCCCAATCCTATGATCGCAACTTCTTCCCTGTCAATCTCTTACCTTCCAATACTAATCACTATAATTCTCGCCAAGACCACACTGCTCTCCAACTTGTGTAG 717 0.4351 MGSSSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASSNTESLSEANTQFYQQESTKLRRQIHEIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREIELQNHNNYLRTKIAEHERAQTNMMQGNGSSTVCESIPSQSQSYDRNFFPVNLLPSNTNHYNSRQDHTALQLV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2184 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 187 - -
Bisa09g2184 238 Pfam K-box region 92 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa09g2184 238 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Bisa09g2184 238 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Bisa09g2184 238 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Bisa09g2184 238 FunFam agamous-like MADS-box protein AGL11 21 104 - -
Bisa09g2184 238 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Bisa09g2184 238 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa09g2184 238 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Bisa09g2184 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Bisa09g2184 238 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Bisa09g2184 238 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Bisa09g2184 238 SUPERFAMILY SRF-like 10 86 IPR036879 GO:0003677|GO:0046983
Bisa09g2184 238 Gene3D - 21 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2184 Bisa-ChrBisa09 35255706 35272085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2184 3 238 MADS-box Gene Family AT3G58780 69.262 2.30e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa09g2184 K-box 4.6e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g2184 09 35255706 35272085 Bisa09g2184 09 35255706 35272085 ECH