Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2090 ATGCTCGATTCCGTTCTCCTGGCGCTGTTTCTCCCCTGCCTCGGCATGAGCGCCGTCTTCATGGTCTACATGTGTCTTCTCTGGTACGCCACCACGCGCCGCCCCGACTTGCCGATGCCGGTGAAGCCCGTCGCCGAGAAGGGCCTCTCGGCGTCGGAGCTGGAGAAGCTGCCGAAGATCACCGGGAAGGAACTGGTGATGGGGAACGAATGCGCGGTGTGCCTCGACGAGATCGAGAGCGAGCAGCCGGCTCGGCTGGTTCCTGGCTGCAACCATGGCTTTCATGTGGAATGCGCCGACGCCTGGCTCTCCAAGCACCCTCTGTGTCCGGTTTGTAGAGCCAAGCTCCTTCCTCTGCTTAATTCCTCTGAAAATAATCCGTGTTAG 387 0.6047 MLDSVLLALFLPCLGMSAVFMVYMCLLWYATTRRPDLPMPVKPVAEKGLSASELEKLPKITGKELVMGNECAVCLDEIESEQPARLVPGCNHGFHVECADAWLSKHPLCPVCRAKLLPLLNSSENNPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2090 128 SMART ring_2 71 112 IPR001841 -
Bisa09g2090 128 Pfam Ring finger domain 69 113 IPR001841 -
Bisa09g2090 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 118 - -
Bisa09g2090 128 SUPERFAMILY RING/U-box 58 120 - -
Bisa09g2090 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 118 IPR013083 -
Bisa09g2090 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2090 Bisa-ChrBisa09 33494541 33494927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2090 1 128 C3H Transcription Factor Family AT5G42200 56.618 1.15e-47 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0576 05 9450159 9450545 Bisa09g2090 09 33494541 33494927 CCT
Bisa09g2090 09 33494541 33494927 Bisa09g2090 09 33494541 33494927 ECH