Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2017 ATGGCTCGAGGTAAGATCCAGATCAAGAGGATAGAGAACACCACCAATCGCCAGGTTACTTACTCGAAAAGACGAAACGGCCTCTTCAAGAAGGCCAATGAGCTCACCGTTCTCTGCGATGCTAAGGTCTCCATTATCATGTTCTCCAGTAGTACTGGCAAGCTCCATGAGTACATTAGCCCCTCCATCACAACTAAGGAGTTCTTCGATCAGTACCAAAAGACCGTCGGGCTTGATCTATGGAGCTCTCACTATGAGAATATGCAGGAGAACTTGAAGAAGCTGAAAGAGGTGAACAGGAATCTTCGTAGAGAGATTAGGCAGAGGATGGGGGACTGTTTGAACGATCTGGGCATGGAAGACCTGAAGCTGCTTGAGGATGAAATGGAACAGGCCACCAAGGTCATTCGTGAGCGTAAGTTTAAGGTTATATCAAATCAGATTGACACTCAGAGGAAGAAGTACAATAACGAGAAAGAAGTACATGGCAGACTCCTACGTGACTTAGAGGCAAGAGCGGAAGATCCACGTTTCGGATTAGTAGAGAATGGATTGGAGTATGATTCTGTGATCGGTTTCTCCAATATAGGTCCACGCATGTTTGCATTAAGCCTGCAGCCTAGCCATCCTAATCATCCCCATCTCGGAGCAGCGGGGTCTGATCTTACCACTTATCCCTTACTTTTCTAG 690 0.4652 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSSTGKLHEYISPSITTKEFFDQYQKTVGLDLWSSHYENMQENLKKLKEVNRNLRREIRQRMGDCLNDLGMEDLKLLEDEMEQATKVIRERKFKVISNQIDTQRKKYNNEKEVHGRLLRDLEARAEDPRFGLVENGLEYDSVIGFSNIGPRMFALSLQPSHPNHPHLGAAGSDLTTYPLLF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2017 229 CDD MADS_MEF2_like 2 81 IPR033896 GO:0000977|GO:0045944
Bisa09g2017 229 Coils Coil 78 112 - -
Bisa09g2017 229 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Bisa09g2017 229 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa09g2017 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Bisa09g2017 229 ProSiteProfiles MADS-box domain profile. 1 62 IPR002100 GO:0003677|GO:0046983
Bisa09g2017 229 Coils Coil 152 172 - -
Bisa09g2017 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa09g2017 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa09g2017 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa09g2017 229 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Bisa09g2017 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 58 IPR002100 GO:0003677|GO:0046983
Bisa09g2017 229 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa09g2017 229 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2017 Bisa-ChrBisa09 32237777 32240533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2017 1 228 MADS-box Gene Family AT3G54340 58.621 7.97e-96 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa09g2017 K-box 1.9e-18 No_clan