Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1898 ATGCAATCAAACGGCTCCGATTCGCAACAACAGCAACAAACAGAGCAGAATCAACGGCAACAGCAAACGCAACCGCCACCGCCACCGCAGCCACTGGCACTGCCACAACAGTGGATGCCGATGCAATACCCTGCGGCGGCGATGGTGATGCAGCATCACATGTTGCCCCCTCAACATTATGCGCCGCCGCCACCTCAGCCCTATTTGCCTTACCACCAGTACCAGCAGTTGCCGCATGTACCTCAAACTCAGCAGCATCAGCATCAGGGATCGACCGGCGAGAACAAGACGATCTGGGTCGGAGATTTACATCATTGGATGGATGAAAATTATCTCCATCGATGCTTCGTTCCCACGGGAGAGATTTCCTCCATTAAGGTCATTCGCAATAAGCAGACTGGTCTATCAGAAGGTTATGGATTTGTCGAATTTTATTCACATGCCACTGCTGAGAATGTTTTACAGAACTATGCTGCCATGTTGATGCCCAATACAGAGCAACCTTTCCGCCTGAATTGGGCAACATTTAGCACAGGAGACAAGCGATCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGCTTGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCACAATCTATGACTGAAATGAACGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGAGCTGCAACTCCTAGGAAATCATCTGGCTATCAACAAGGAGGCCATGCGGCAAATGGAACATCCGGCCAATCTGAAGCAGATTCAACAAACACAACTATATTTGTTGGAGGACTCGACCCTGATGTTACAGATGACGATCTTAGGCAGCCATTCTCCCAATATGGAGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGATGTGGATTTGTACAATTTGCTAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACGACGATTGGCAAACAATCAGTTCGTCTTTCTTGGGGTCGCAATCCAGCAAATAAGCAGTTTAGAGTGGAGTTTGGCAACCCTTGGAGTGGGGCGTACTACGGGGGCCCTGTTTATGATGGTTATGGATATGCTTTGCCACCTCCTCATGACCCAAGCATATATGCAGCTGCATACGGGGCTTATCCCGTATATGGAGGCCACCAACAGCAAGTAAGCTGA 1278 0.4687 MQSNGSDSQQQQQTEQNQRQQQTQPPPPPQPLALPQQWMPMQYPAAAMVMQHHMLPPQHYAPPPPQPYLPYHQYQQLPHVPQTQQHQHQGSTGENKTIWVGDLHHWMDENYLHRCFVPTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAENVLQNYAAMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQSMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGHAANGTSGQSEADSTNTTIFVGGLDPDVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQSVRLSWGRNPANKQFRVEFGNPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPVYGGHQQQVS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1898 425 Gene3D - 177 282 IPR012677 -
Bisa09g1898 425 MobiDBLite consensus disorder prediction 269 292 - -
Bisa09g1898 425 SUPERFAMILY RNA-binding domain, RBD 171 285 IPR035979 GO:0003676
Bisa09g1898 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Bisa09g1898 425 SUPERFAMILY RNA-binding domain, RBD 286 395 IPR035979 GO:0003676
Bisa09g1898 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Bisa09g1898 425 SMART rrm1_1 97 172 IPR000504 GO:0003723
Bisa09g1898 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Bisa09g1898 425 SMART rrm1_1 190 264 IPR000504 GO:0003723
Bisa09g1898 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Bisa09g1898 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 163 IPR000504 GO:0003723
Bisa09g1898 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 260 IPR000504 GO:0003723
Bisa09g1898 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 371 - -
Bisa09g1898 425 CDD RRM2_SECp43_like 188 267 - -
Bisa09g1898 425 Gene3D - 283 397 IPR012677 -
Bisa09g1898 425 CDD RRM1_SECp43_like 97 177 - -
Bisa09g1898 425 MobiDBLite consensus disorder prediction 1 21 - -
Bisa09g1898 425 SUPERFAMILY RNA-binding domain, RBD 61 177 IPR035979 GO:0003676
Bisa09g1898 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723
Bisa09g1898 425 MobiDBLite consensus disorder prediction 265 292 - -
Bisa09g1898 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Bisa09g1898 425 FunFam Polyadenylate-binding protein RBP47B 95 175 - -
Bisa09g1898 425 Gene3D - 95 175 IPR012677 -
Bisa09g1898 425 FunFam Polyadenylate-binding protein RBP47 280 397 - -
Bisa09g1898 425 FunFam Polyadenylate-binding protein RBP47C isoform A 188 264 - -
Bisa09g1898 425 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1898 Bisa-ChrBisa09 29763342 29767980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1898 97 393 Eukaryotic Initiation Factors Gene Family AT2G23350 27.273 4.49e-22 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0813 05 13545732 13548756 Bisa09g1898 09 29763342 29767980 CCT
Bisa09g1898 09 29763342 29767980 Bisa09g1898 09 29763342 29767980 ECH