Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1866 ATGCAAGGGCAAAGGGGTACAATAGGTTCCCTGCCTGAAACCTTGGAGTTTGATTGTGGATCCACTTCAAGTAATTCTACCATGGATCAGCAGATTGGCTGGGAGAGCACAAGGAACCCTGCAGAAAATCAAATACCTCAATTTATACTTTCACCTGGAGATATGAATCCATTGTATGCAAATTCTTTTAACCATGAATGGAAGAACTTGAGTGGTTGGAGCTTAGGTGAGCCCAGTTCCAGTGGTGCACAGGCAGAGATTAACAATAATGAGCAGAAAAGAGAACTCGGATGGTCTTCTTCAGTGAGTGCTGGTGCTGTAGCTGGTTCAAGATTAGAGCGGCACTTTGAACCAACTAATGTTCTTTCATTGGACAATGTCAATACAAGTCCTATGTGTATGCATGGCTCCAATCCTCATTCTGTGCCACAGAGTCTCAACTTAAATGCCGGTTTGGCAGACAGTGGCAGTGATACTAGTCAACATCTGGAGCATCCTAGCTTGAACAAATCTAGTGGGTCAGCAAATGAGCCTATTCCAACTACTATTGGTCCTCCTCCTTTTTTTCTTCCTTCTGGAAATAATAGCTTCTTGGTAGACGATGCTAATGGTAGGGCAGGTTGTTCTCTTGATGCTCGTCGTGCATCTTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCATCAGATGGCGGAAGTTCTAGCTACAGCCAGCATACAGAAAGTAGTACTTGGCACACTTTTCCTACACAGAATAATACTCGGAGTAGTTCAGGCAGATCTGCTTCATCAGCACAAGTAAGTTCAAGACTTGGCCTGGGTATGGGGGATGAATCCTCTGAGAGCATTCATGATTTGAATGTTGCGGGAAGCCCAAATAGTTTCCACAGGAATTTTCGTATGAGGATAAATCCTTCAAATCAACAAGATTTTGTTCCTCCTGCTGCATTCTCAAATGGGAGTTTGATAAGGCATTCTACTGTTTCTTCATCTCCTATGTCACAAAGGTTTCATCCTGTTGATAATTCTCTGGATTTGAGGTCAGCATCGACAGTAGATAATATGGCTCCTCAAAGCCACCCTGTTGGAACCAGTCCTTCTTTACCCAGAAATATGCAATCATTTAGATGGGGTGGCAGTTCTAGCTCAAGAAACAGCCATTTGTCAAACTCAATTATTTGTTCAGACCGAGATAATCTACCACTTGAAGAATCAAGCTCAAGAAGTATGTCTAGAAACATATTAGAACATCCATTGTTTGTGCCTGCAGCTGATTTAAGAAATTTGGCTCGAAATCCAACAAGTAGAGCTTCAAGTAGTTCAAATTTAAATATATCAGGAAATGTTGCTTCATCATCACGGACTGGATCAAATTCAGCCATCAATCCACCATCTGCCCCAACTTGGGTTTCTCGTCCTAATCCTCCACAGTATTCACGGAGGTTATCTGAATATGTTCGTAGATCATTGTTGTCTTCTGCTTCTGAGGCTGCTGGAGGTTCAAGCAACAACAGTTCTTTCCTGCGCTCTGCTCCTGTTGCTTCATCTGAAGCAAGGACATCATCATCTCGAGCTAGTAGCCATGGACGTCATCAGTCACGCTCAAGATCATCATTATGGTTGGAGAGGCAAGGTGATAATGACTTCAGAATTCCTTATTCGTTACAATCTTTGGCTGTTGCCGGTGAAGGAAGCAGTAGACTTGTATCTGAGATCCGCAATGTTTTGGGACTCATGCGTAGGGGTGGGAACCTAAGATTTGAGGATGTTATGATATTTGACCATTCGGTATTTTCTGGAATGGCTGATATACATGACCGACACAGGGACATGCGACTCGATGTTGATAACATGTCATATGAGGAGTTGTTGGCTCTGGAAGAACGTATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTATATTGAAACTACTGAAACAGAAGAAGTATTCAGTTGAAGAAGGATCTCAGGCTGAGGCCGAACCCTGCTGTGTTTGTCAGGAAGAGTTTAATGACGGAGTTGATATTGGAACGCTTGATTGTGGCCATGATTACCATGCCGACTGTATCAAACAGTGGCTAATGCACAAGAATCTGTGCCCTATTTGTAAGACAACTGGTTTGGCAACGTGA 2139 0.4292 MQGQRGTIGSLPETLEFDCGSTSSNSTMDQQIGWESTRNPAENQIPQFILSPGDMNPLYANSFNHEWKNLSGWSLGEPSSSGAQAEINNNEQKRELGWSSSVSAGAVAGSRLERHFEPTNVLSLDNVNTSPMCMHGSNPHSVPQSLNLNAGLADSGSDTSQHLEHPSLNKSSGSANEPIPTTIGPPPFFLPSGNNSFLVDDANGRAGCSLDARRASCKRKAVEGYVGQSSDGGSSSYSQHTESSTWHTFPTQNNTRSSSGRSASSAQVSSRLGLGMGDESSESIHDLNVAGSPNSFHRNFRMRINPSNQQDFVPPAAFSNGSLIRHSTVSSSPMSQRFHPVDNSLDLRSASTVDNMAPQSHPVGTSPSLPRNMQSFRWGGSSSSRNSHLSNSIICSDRDNLPLEESSSRSMSRNILEHPLFVPAADLRNLARNPTSRASSSSNLNISGNVASSSRTGSNSAINPPSAPTWVSRPNPPQYSRRLSEYVRRSLLSSASEAAGGSSNNSSFLRSAPVASSEARTSSSRASSHGRHQSRSRSSLWLERQGDNDFRIPYSLQSLAVAGEGSSRLVSEIRNVLGLMRRGGNLRFEDVMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQKKYSVEEGSQAEAEPCCVCQEEFNDGVDIGTLDCGHDYHADCIKQWLMHKNLCPICKTTGLAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1866 712 SMART ring_2 665 705 IPR001841 -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 354 392 - -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 132 179 - -
Bisa09g1866 712 FunFam E3 ubiquitin-protein ligase MBR2 633 710 - -
Bisa09g1866 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 213 710 IPR045191 GO:0061630
Bisa09g1866 712 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 496 540 - -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 496 535 - -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 228 276 - -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 432 477 - -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 224 292 - -
Bisa09g1866 712 Pfam Ring finger domain 665 706 IPR001841 -
Bisa09g1866 712 SUPERFAMILY RING/U-box 652 708 - -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 16 30 - -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 1 30 - -
Bisa09g1866 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 709 IPR013083 -
Bisa09g1866 712 MobiDBLite consensus disorder prediction 132 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1866 Bisa-ChrBisa09 29226538 29230518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1866 1 712 C3H Transcription Factor Family AT2G15530 33.289 4.65e-84 278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0235 05 3636758 3640459 Bisa09g1866 09 29226538 29230518 CCT
Bisa09g1866 09 29226538 29230518 Bisa09g1866 09 29226538 29230518 ECH