LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g1862	ATGGGGCGAAGCAGTCCGGATTATCAGCGGAGGAAGCAAGAGAAACGATACAGAGGGATTCGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATCCGAGAGCCCAACAAAAGGTCCAGGCTTTGGCTCGGCTCTTATACCACTCCCGTCGCCGCAGCCCGCGCCTACGACACCGCCGTTTTCTATCTCAGAGGCCCCTCTGCTCCTCTCAACTTCCCCGACTTGCTCTTCCAAAACGACGACCGCCACCATGTCGTACAGGGCCACATGTCCCCTGACTCCATACGCAAGAAGGCCAGCGAAGTCGGCGCCCAAGTCGACGCTCTTCACGCCGCTCTTCCTTCTGATACTCATACCCACTCCCAAAAACCCGACTTGAATGAGTTCCCCGAACCCGAAGATCCTCTTCACGATTACAGTTAG	423	0.5697	MGRSSPDYQRRKQEKRYRGIRMRKWGKWVAEIREPNKRSRLWLGSYTTPVAAARAYDTAVFYLRGPSAPLNFPDLLFQNDDRHHVVQGHMSPDSIRKKASEVGAQVDALHAALPSDTHTHSQKPDLNEFPEPEDPLHDYS	140

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g1862	140	CDD	AP2	15	75	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1862	140	FunFam	Ethylene-responsive transcription factor 2	15	74	-	-
	Bisa09g1862	140	Gene3D	AP2/ERF domain	15	74	IPR036955	GO:0003700\|GO:0006355
	Bisa09g1862	140	SMART	rav1_2	16	79	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1862	140	MobiDBLite	consensus disorder prediction	108	140	-	-
	Bisa09g1862	140	MobiDBLite	consensus disorder prediction	121	140	-	-
	Bisa09g1862	140	PRINTS	Ethylene responsive element binding protein signature	17	28	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1862	140	PRINTS	Ethylene responsive element binding protein signature	55	75	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1862	140	SUPERFAMILY	DNA-binding domain	16	74	IPR016177	GO:0003677
	Bisa09g1862	140	ProSiteProfiles	AP2/ERF domain profile.	16	73	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1862	140	Pfam	AP2 domain	16	65	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1862	140	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED	11	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g1862	Bisa-ChrBisa09	29127386	29127808	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g1862	10	134	AP2-EREBP Transcription Factor Family	AT3G50260	57.971	3.87e-48	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa09g1862		AP2	2.9e-11	CL0081