Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1860 ATGAATACTCTCTCGCTCTGCTTCGCAATAGAACCTACCCCTTCTTCACTTTTCCGTCGCAATCGCTGGTCACAGAGCAGCCTCCATTTCTGGCCGTTCCCCTCCTCCAATTTTAGAAACACTCTGTTATTTTCATTCTCGTCCAAATCCCCACTTCAGAGTTTGCCCTCACGCCGATGTCTAACGAGAACCTGGTTCGCCGCAACTTCCGACATCGACATGGTCAGGACCAAGGAAGGCATTTATGCCCCCAAACAGAAGAAGGTGGTGGTCCTTTGGGACCTCGATAACAAACCTCCTCGCGGGCCGCCGTATCAGGCTGCCATGGCGCTGAAACAGGTCGCACAACGCTTCGGTGACGTTGTCGACATGTCTGCCTACGCCAATCGTCACGCATTTATCCATTTACCCCAATGGGTTCTCTACGAACGCCGTGAGCGGAAGCAAATGGACATTCTGGAGCGAAAAGGAGCGCTCACGCCTTCCGAGCCGTACGTTTGTGGGGTTTGCGGCCGCAAGTGTAAGACTAATTTCGACCTCAAGAAGCATTTCAAGCAGCTCCACGAGCGAGAGCGTCAGAAGAAGCTGAACAGGGTGAGGTCGCTTAAGGGGAAAAAGCGTCAGCGTTATAAAGAGAGGTTCATATCTGGGAATCATAAGTATAATGAGGCAGCGAGGTCTTTGATCGCCCCTAAGGTGGGATATGGACTCGCTTCGGAGTTAAGGCGTGCCGGAGTGTTTGTGAAGACGGTAGAGGATAAACCTCAAGCAGCTGATTGGGCACTGAAGAGGCAGATGCAACACTCAATGAGCCGAGGGATAGATTGGTTGTTTTTGGTTTCGGACGATTCAGATTTCTCGGAGATGTTGAGGAGGGCGAGGGAGGCAAATTTGGGAACGGTGGTTGTGGGGGATTGGGACAAGGCATTAGGGCGTCACGCAGACTTATGGGTTCCTTGGATTGGAGTTGAGAATGGAGAGCTAGCTGAGAAAGATTTAGTGCCTAAGAACAGAAGGAGAACAGAGTCTTTTTCTAAAGATGATGGCTTCTTTTCTATTTCGGATTATGATGGAGAAAGTGTTGGTGTAAGCGATTTGGATGGGATTGTGGATGAGCTTGTGGCAGTGAGAACTGAATTTAATGATTTGAGAAATGCAACATTTTCAGACGGGGAGGAGGAAGAAGGGTGGGTTTCAGAAGAAGTGGATGGAGATTATATGTTAGTGATTAGTGAGGACGAGGAAACAGAAGAAGAAGATGGGTTCTATTGA 1272 0.4921 MNTLSLCFAIEPTPSSLFRRNRWSQSSLHFWPFPSSNFRNTLLFSFSSKSPLQSLPSRRCLTRTWFAATSDIDMVRTKEGIYAPKQKKVVVLWDLDNKPPRGPPYQAAMALKQVAQRFGDVVDMSAYANRHAFIHLPQWVLYERRERKQMDILERKGALTPSEPYVCGVCGRKCKTNFDLKKHFKQLHERERQKKLNRVRSLKGKKRQRYKERFISGNHKYNEAARSLIAPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLRRAREANLGTVVVGDWDKALGRHADLWVPWIGVENGELAEKDLVPKNRRRTESFSKDDGFFSISDYDGESVGVSDLDGIVDELVAVRTEFNDLRNATFSDGEEEEGWVSEEVDGDYMLVISEDEETEEEDGFY 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1860 423 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 61 393 - -
Bisa09g1860 423 CDD PIN_LabA-like 175 305 - -
Bisa09g1860 423 ProSitePatterns Zinc finger C2H2 type domain signature. 167 188 IPR013087 -
Bisa09g1860 423 Gene3D - 164 320 - -
Bisa09g1860 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 193 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1860 Bisa-ChrBisa09 29110954 29112225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1860 6 408 C2H2 Transcription Factor Family AT5G52010 61.125 9.13e-171 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa09g1860 None None None