Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1830 ATGTCTGTCTCAAGTCCAGGAGATTGTTTCGTGCAGCCATTGATCTTTCCTATATATTCCGCATTCGTCCATCTGCTCATCGCCGGAAGATTCAGTACTTTCAAGTGCATACAAGAGAAATTCATTGAAACGAAATCAGATCAAATCAAATTCCCAGAGGGAGAAATTAATATGGGGAGAGTGAAGCTTCAGATCAAGAAGATTGAGAATGTAACAAACAGACAGGTCACTTTCTCAAAGAGGAGGAATGGGCTTATCAAGAAAGCTTATGAACTCTCAGTTCTCTGTGACGTTGATGTGGCTCTAATTATGTTCTTCCCCTCTGGCAGACCCAGTCTCTTCTCTGGGACCAAAAGGTCAGCTTCCCTTGTACTCATCAACATTAATCTTAACCCAACTTATTAG 405 0.4148 MSVSSPGDCFVQPLIFPIYSAFVHLLIAGRFSTFKCIQEKFIETKSDQIKFPEGEINMGRVKLQIKKIENVTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFFPSGRPSLFSGTKRSASLVLININLNPTY 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1830 134 ProSiteProfiles MADS-box domain profile. 58 118 IPR002100 GO:0003677|GO:0046983
Bisa09g1830 134 SMART madsneu2 58 117 IPR002100 GO:0003677|GO:0046983
Bisa09g1830 134 CDD MADS_MEF2_like 59 117 IPR033896 GO:0000977|GO:0045944
Bisa09g1830 134 PRINTS MADS domain signature 95 116 IPR002100 GO:0003677|GO:0046983
Bisa09g1830 134 PRINTS MADS domain signature 80 95 IPR002100 GO:0003677|GO:0046983
Bisa09g1830 134 PRINTS MADS domain signature 60 80 IPR002100 GO:0003677|GO:0046983
Bisa09g1830 134 Gene3D - 70 127 IPR036879 GO:0003677|GO:0046983
Bisa09g1830 134 PANTHER SERUM RESPONSE FACTOR HOMOLOG 60 119 - -
Bisa09g1830 134 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 67 112 IPR002100 GO:0003677|GO:0046983
Bisa09g1830 134 SUPERFAMILY SRF-like 59 118 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1830 Bisa-ChrBisa09 28572579 28575590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1830 58 130 Type I MADS-box Gene Family AT1G77980 72.603 9.82e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa09g1830 SRF-TF 2.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1830 09 28572579 28575590 Bisa09g1830 09 28572579 28575590 ECH