Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1808 ATGGCTATGGAAGCCCTGCAATCGCCCACTACTGCTTCAGCATCATTTCCCTTCCAACCCTCCGACCTCCACTCTCTGGAGCCATGCCCATGGGCTAAGCGAAAGCGTTCCAAGCGCAGCCGGCTCGATCACGACCACCCTTCCCGCACCGAGGAGGAGTACCTCGCTCTCTGCCTCGTTATGCTCGCTCGTGGCCACACCGATTCCGCCGCTTCACCTCCTCCACCCTCCGACAACTCTGCGCCTCTAGCCGCCACTCACAGATGCTCTGTTTGCAACAAAGCCTTCTCCTCTTACCAGGCTCTCGGCGGTCACAAGGCCAGTCATCGGAAACTCGCCGGCGAATATCAAAACACTTCCTCCAACGTCACCAGTACTACTTCTGCCACCACCACCACCGCATCCAACGGCGGAGGCAGGCTCCACGAGTGCTCCATCTGCCATAAGTCCTTTCCCACCGGACAGGCCTTGGGCGGACACAAACGTTGCCACTACGAAGGCGGCGCTTCCAGCGCCACCACCGCCACCACCGCCTCCGAAGGGGTCGGCTCCACCCATACCATGAGCCAGACACACCGTGATATCGATCTGAACATCCCTGCTTTCTCCTTTACCGGTGAGCAGGAGGTTGAGAGCCCTCACCCGCTGAAGAAGCCCCGCCTTTCGATTATACCATAG 678 0.5959 MAMEALQSPTTASASFPFQPSDLHSLEPCPWAKRKRSKRSRLDHDHPSRTEEEYLALCLVMLARGHTDSAASPPPPSDNSAPLAATHRCSVCNKAFSSYQALGGHKASHRKLAGEYQNTSSNVTSTTSATTTTASNGGGRLHECSICHKSFPTGQALGGHKRCHYEGGASSATTATTASEGVGSTHTMSQTHRDIDLNIPAFSFTGEQEVESPHPLKKPRLSIIP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1808 225 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Bisa09g1808 225 MobiDBLite consensus disorder prediction 1 20 - -
Bisa09g1808 225 SMART c2h2final6 87 109 IPR013087 -
Bisa09g1808 225 SMART c2h2final6 142 164 IPR013087 -
Bisa09g1808 225 Pfam C2H2-type zinc finger 142 165 - -
Bisa09g1808 225 Pfam C2H2-type zinc finger 87 111 - -
Bisa09g1808 225 Gene3D Classic Zinc Finger 84 164 - -
Bisa09g1808 225 MobiDBLite consensus disorder prediction 117 138 - -
Bisa09g1808 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Bisa09g1808 225 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 201 IPR044653 GO:0003700
Bisa09g1808 225 MobiDBLite consensus disorder prediction 1 48 - -
Bisa09g1808 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
Bisa09g1808 225 SUPERFAMILY beta-beta-alpha zinc fingers 87 164 IPR036236 -
Bisa09g1808 225 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Bisa09g1808 225 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1808 Bisa-ChrBisa09 28118425 28119102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1808 1 223 C2H2 Transcription Factor Family AT1G27730 50.870 3.46e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa09g1808 zf-C2H2_6 1.7e-12 CL0361