Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1783 ATGGATTCTGATCAAGCCAAGTTGTTCGTCGGTGGCATTTCGCGGGAGACCACCGAAGATATTCTCAAAGACCACTTTGCCAAGTACGGCTCTGTTTTGGGTTCAACCATTTCGGTGGACCGAAGCACAAGACATCCCAGAGGCTTCGGCTTTGTTTGGTTTTCTGATCTGTCAGCAGCTGATAAAGCTCTTCACGACAAGCATGTTATATTAGGAAGGACGGTAGAAGTGAAAAAAGCGATACCCAGAAGTGAACAGCAAATTCAGTACCAGCCACAGGCTAGGGGGACGAATAACAGTATTAGTAATGACAGTAGCAGTGACCGCGTTAGGACGAAGAAGATTTTTGTTGGAGGCTTGTCAGCTGGTATATCTGAGGAGGAGTTTAAGAAATATTTCGAGAGGTTTGGTAGAATAACTGACGCAGTGGTGATGCAGGATAATATAACTCACCGGCCTAGGGGGTTTGGTTTCATCACTTTTGATTCAGAAGATTCCGTTGAAAATGTTATGTTGAAAAACTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAAAGGGCTGTGCCGAAAGAGGGGAACAATGGTAGTGATGGTTTTAATAAATTAAGGCTGAAGAGTGGAAGAGGAGCCCCCAAAAGTTTCTCTCAGTATAGTCCTAGGTATATGCACCCTGGCTTTGCACCTCTTTCCTGGTATAGCAGTGATGGATTATATTTTTATGGATTAAACAACTATAATTGTTGGTACCCTGTGGGAGGGTATGAGGGGAATGGATATGGAGTTCCGGCTGATGCTCCTAGGAACTTTTGGTATCAGCCACTGGTAACCAATGCTCAGGCATGCCAGGTGCCCTACGGCAATGCTTGGCCAAGTCCTGCACATATGAGTGGTAAGATTGCAATATTTGGTGCCGGAGCCAAAGGTTACAGTGGTATCGCGGGGTCGGAAACAAATTTGAAGTTTGATCATGTTAACGGATTTGTACCAGCTGATGTGAGTCATGTGACATTACCTCAGGTTGGAGTAGTAAAGCTGGATGTTGACTCTTCAAGATTGAGAGGAAGCGATGGTGAAGCTTCCAGCTAA 1089 0.45 MDSDQAKLFVGGISRETTEDILKDHFAKYGSVLGSTISVDRSTRHPRGFGFVWFSDLSAADKALHDKHVILGRTVEVKKAIPRSEQQIQYQPQARGTNNSISNDSSSDRVRTKKIFVGGLSAGISEEEFKKYFERFGRITDAVVMQDNITHRPRGFGFITFDSEDSVENVMLKNFHDLNGRQVEVKRAVPKEGNNGSDGFNKLRLKSGRGAPKSFSQYSPRYMHPGFAPLSWYSSDGLYFYGLNNYNCWYPVGGYEGNGYGVPADAPRNFWYQPLVTNAQACQVPYGNAWPSPAHMSGKIAIFGAGAKGYSGIAGSETNLKFDHVNGFVPADVSHVTLPQVGVVKLDVDSSRLRGSDGEASS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1783 362 MobiDBLite consensus disorder prediction 85 106 - -
Bisa09g1783 362 Gene3D - 86 203 IPR012677 -
Bisa09g1783 362 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bisa09g1783 362 SMART rrm1_1 114 186 IPR000504 GO:0003723
Bisa09g1783 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Bisa09g1783 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bisa09g1783 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Bisa09g1783 362 MobiDBLite consensus disorder prediction 189 208 - -
Bisa09g1783 362 SUPERFAMILY RNA-binding domain, RBD 109 198 IPR035979 GO:0003676
Bisa09g1783 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bisa09g1783 362 Gene3D - 4 85 IPR012677 -
Bisa09g1783 362 CDD RRM2_Hrp1p 114 191 - -
Bisa09g1783 362 SUPERFAMILY RNA-binding domain, RBD 3 107 IPR035979 GO:0003676
Bisa09g1783 362 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 274 - -
Bisa09g1783 362 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1783 Bisa-ChrBisa09 27716858 27718206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1783 8 229 Eukaryotic Initiation Factors Gene Family AT4G34110 26.407 4.14e-15 74.7