Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1732 ATGGAAACTGAGATTGGAACTAGCAATGCTGAAAACACAGAATGTTCAGAAGCGGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGAGGTTGCCGACAAGAATAACGTTAACGGAGGAGTTCAGCACTTGAAAAGTGAAGCTGTGAATAATGGGGTGGTATTTGCAGAAGGGAATGATGTTGCTGAAGGGGACTCTGGTGGAGTAGAAAGTATTAGAACTTACAAAAGGCGTAAGCATGTAAAGTTGAGTTCAGAAAGCAAAGCTCAAGACGATCGCAGAGCATACATGGAAGCTACAAGTCATATAGCAGACCAGGTTGTGAAGGAACCGTGTAATGTAGCTGTAGGAAATACTTCAGATAATTGTTCAAATCGAGATTGGGGAAATGTTGTACTAAAGCAGTTGTATCAGTCATTAGGTAATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCTCTCATGCACCATTCTAGAATTGGTTGTACCACTACAGTAAAGGAAACTAGTAAACTGGACAAAGATGGACAAGAGTACACTTTGCAAAATGCGCAGATGTCTCATAGGTTACAGAGGGAAGTTAATGGGAATGCAAAGGTCTTGCATAATGGATGCTCTAGTGAGTCAGACAAGCCCAATGCAACTGAGATGTGTCAGCGTGCACTTAGTAATATCTTAGTTTCTGAGAAATTCAGTTCGTTATGTAAGGTTCTAATAGAAAATTTCAAAGGAATGAAGCCTGAAAGTGTTTTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAGCGAGCATATGAACAGTCACCTACTCTTTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAATGGGATTGTTTCTCTTGCCAAGAGCCTTTCAAACTTGTCAAGAAATTTCTACTGTGAGCAGGCTGGAATTTCAGTGCACAGCACATTCAAAGATGGAAAGCAGGAGTTTTGTAACCGGGAATCTGACTCTCACATGAAACCAGAGCAGACAGAAGACTGCAGCATGCATAAAATTTGCACTTGCAGGCGTTGTGGAGACAAAGCAGATGGGGCAAACTGTTTGGTTTGTGATTCATGTGAGGAGATATATCATGTCTCCTGTATTGAACCTGCTGTCAAAGAGATACCCCACAAAAGCTGGTACTGTGCCAAATGCACTGCTAGTGGAATTGGATCTCCACATGAAAATTGTTTGGTATGTGAAAGATTGAATGTCTCAAGGACTTTGAACAACAAAGTTTTTGATGAAAGCTTCCCTACAGATGAGGAAGCAGTTAATGAATTGGAAGAGAATTCAAATTGCACCTATGATGGGGTTCAAGCATCTAGAAGGGGGGAAAACTTGTCTGATTGCAAAATTTGTGGAAATGAAGTGGATAGTGAAAGAATGAAAATCTGTGGCCACTCCTTCTGCTCCAATAAATACTACCATTTTAGGTGCCTGACAATTAAGCAATTACAATCATATGGTCCCTGCTGGTACTGCCCTTCTTGTTTATGCCAAGTCTGTCTCACTGATCGAGATGATGATCAGATTGTTCTCTGCGATGGCTGTGATCAAGCGTACCATATCTATTGCATGAAACCTCCACGAACTTCTATTCCAAAAGGGAAATGGTTCTGCAGAAAATGTGATACAGGGATCCAAGCAATACGCCAGGCAAGAAAGGCGTATGAAAGTAACAAGCAGAGAAAAACAACTCAAGATGGTTCAAAGCCTAGTGGTAAATTTGAAAAAAAATGGCAGAATAAACATGGACAAGAATTGGAAAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACACTGAATTTCGAAGAGAACTTGGCTGCAATCCAGTCACAGAGAACGTGA 1887 0.4102 METEIGTSNAENTECSEAVQCLKSEAVNNEVADKNNVNGGVQHLKSEAVNNGVVFAEGNDVAEGDSGGVESIRTYKRRKHVKLSSESKAQDDRRAYMEATSHIADQVVKEPCNVAVGNTSDNCSNRDWGNVVLKQLYQSLGNDKGGIEGCMREALMHHSRIGCTTTVKETSKLDKDGQEYTLQNAQMSHRLQREVNGNAKVLHNGCSSESDKPNATEMCQRALSNILVSEKFSSLCKVLIENFKGMKPESVFDFSVINSRLKERAYEQSPTLFLSDIQQVWRKLQDTGNGIVSLAKSLSNLSRNFYCEQAGISVHSTFKDGKQEFCNRESDSHMKPEQTEDCSMHKICTCRRCGDKADGANCLVCDSCEEIYHVSCIEPAVKEIPHKSWYCAKCTASGIGSPHENCLVCERLNVSRTLNNKVFDESFPTDEEAVNELEENSNCTYDGVQASRRGENLSDCKICGNEVDSERMKICGHSFCSNKYYHFRCLTIKQLQSYGPCWYCPSCLCQVCLTDRDDDQIVLCDGCDQAYHIYCMKPPRTSIPKGKWFCRKCDTGIQAIRQARKAYESNKQRKTTQDGSKPSGKFEKKWQNKHGQELEKGGGMDMLLTAANTLNFEENLAAIQSQRT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1732 628 MobiDBLite consensus disorder prediction 567 600 - -
Bisa09g1732 628 SMART PHD_3 511 554 IPR001965 -
Bisa09g1732 628 SMART PHD_3 459 508 IPR001965 -
Bisa09g1732 628 SMART PHD_3 349 395 IPR001965 -
Bisa09g1732 628 FunFam PHD finger protein EHD3 isoform A 237 398 - -
Bisa09g1732 628 PANTHER OS02G0192300 PROTEIN 252 396 - -
Bisa09g1732 628 ProSiteProfiles Zinc finger PHD-type profile. 347 397 IPR019787 -
Bisa09g1732 628 Pfam PHD-finger 509 554 IPR019787 -
Bisa09g1732 628 Pfam PHD-finger 350 396 IPR019787 -
Bisa09g1732 628 SUPERFAMILY FYVE/PHD zinc finger 508 559 IPR011011 -
Bisa09g1732 628 ProSiteProfiles Zinc finger RING-type profile. 460 507 IPR001841 -
Bisa09g1732 628 SUPERFAMILY FYVE/PHD zinc finger 341 397 IPR011011 -
Bisa09g1732 628 ProSiteProfiles Zinc finger PHD-type profile. 506 556 IPR019787 -
Bisa09g1732 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 559 IPR013083 -
Bisa09g1732 628 MobiDBLite consensus disorder prediction 567 602 - -
Bisa09g1732 628 SUPERFAMILY FYVE/PHD zinc finger 455 507 IPR011011 -
Bisa09g1732 628 Gene3D - 254 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1732 Bisa-ChrBisa09 26056487 26062978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1732 508 574 C2H2 Transcription Factor Family AT3G01460 41.791 1.63e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa09g1732 PHD 1.2e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0892 05 15368417 15372840 Bisa09g1732 09 26056487 26062978 CCT
Bisa09g1732 09 26056487 26062978 Bisa09g1732 09 26056487 26062978 ECH