Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1726 ATGGTTAAGAAGAAGCAGGAAGAGAAGGAGACTGTGAGAGAAAGAGAGATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTATTCAAAGAGGAAGAATGGGATCCTCAAGAAGGCCAAGGAAATCACTGTTCTATGCGATGCCCAAGTTTCCCTTATTATCTTTGCTGCTTCTGGAAAAATGCATGAATACATCAGCCCTTCCACCACGTTGATTAACGTACTGGACAGATACCACAAAACGTCTGGGAAGAGGCTTTGGGACGCTAAGCATGAGGATCTAAACAACGAAATTGATAGACTGAAGAAAGAGAATGAGAGCATGCAAATTGAGCTGAGGCACTTGAAGGGGGAGGATATTAACACCCTTAATTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAAAATGGCCTCACCGGTGTCCGCGACAAACAGGCAAATCTTTCTTCCAAAATTTCAATATTCTCATACAATGGAGGTGTACAGGATGTTCAGGAGAAATGTATGTTCGACTCAACTTGA 552 0.4348 MVKKKQEEKETVREREMGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHEYISPSTTLINVLDRYHKTSGKRLWDAKHEDLNNEIDRLKKENESMQIELRHLKGEDINTLNYKELMALEDALENGLTGVRDKQANLSSKISIFSYNGGVQDVQEKCMFDST 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1726 183 ProSiteProfiles K-box domain profile. 100 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa09g1726 183 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Bisa09g1726 183 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Bisa09g1726 183 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Bisa09g1726 183 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Bisa09g1726 183 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 155 - -
Bisa09g1726 183 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Bisa09g1726 183 Coils Coil 93 127 - -
Bisa09g1726 183 CDD MADS_MEF2_like 18 96 IPR033896 GO:0000977|GO:0045944
Bisa09g1726 183 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Bisa09g1726 183 SUPERFAMILY SRF-like 18 112 IPR036879 GO:0003677|GO:0046983
Bisa09g1726 183 Pfam K-box region 98 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa09g1726 183 Gene3D - 29 125 IPR036879 GO:0003677|GO:0046983
Bisa09g1726 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1726 Bisa-ChrBisa09 25942546 25944962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1726 17 166 MADS-box Gene Family AT5G20240 66.000 1.38e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa09g1726 K-box 6.2e-17 No_clan