LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g1655	ATGGTGAAGGGAGAGCAGAAGATCCACACAGAGGCGGCAAACTCAAAGGCAATGCAATCAGATGGGATTGGGAAGAAGAAGTACAAGGGAGTGAGAATGAGAAGCTGGGGATCATGGGTTTCAGAGATTAGAGCACCGAACCAGAAAACAAGAATATGGTTAGGGTCTTATTCTACAGCAGAAGCAGCAGCCAGAGCCTATGATGCTGCACTTCTTTGCCTCAAAGGCTCCTCAGCCAATCTCAACTTCCCTTTATCTTCTTCTTCTTCACACTACATTATTCCTCAAGACACTGTCATGTCTCCTAAATCAATCCAAAGAGTTGCTGCTGCTGCCGCAAATAGCTTCATTGACAACAATGTCACAGCCTCGCCTTCCCCTCCTCCTTCGTCTTCCTCTGCCTCTGCATCAACCCCTTCGACCTCCCCAGTCTCCTCCCCATCAATGTCCTCAGATCAAATCGATGATGATGTCTCACTAATCTCATCTTTTGTAGCTGATCAGACAGATGAACCAATCTCTTTGATGGACTCTTGGTACAGCTTTGATGCTTTACAGTCTCCAAAATATGTTGATCAAATGCTCAGTGGGGCTTTGTTTGATATTGATTCAACCCATCTGCTCGATGATTTTTACGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCTGA	672	0.4539	MVKGEQKIHTEAANSKAMQSDGIGKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPLSSSSSHYIIPQDTVMSPKSIQRVAAAAANSFIDNNVTASPSPPPSSSSASASTPSTSPVSSPSMSSDQIDDDVSLISSFVADQTDEPISLMDSWYSFDALQSPKYVDQMLSGALFDIDSTHLLDDFYEESDIRLWSFC	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g1655	223	PRINTS	Ethylene responsive element binding protein signature	28	39	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1655	223	PRINTS	Ethylene responsive element binding protein signature	50	66	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1655	223	MobiDBLite	consensus disorder prediction	1	21	-	-
	Bisa09g1655	223	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	14	165	-	-
	Bisa09g1655	223	FunFam	ethylene-responsive transcription factor ERF014-like	26	86	-	-
	Bisa09g1655	223	Gene3D	AP2/ERF domain	26	86	IPR036955	GO:0003700\|GO:0006355
	Bisa09g1655	223	Pfam	AP2 domain	27	76	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1655	223	SUPERFAMILY	DNA-binding domain	27	86	IPR016177	GO:0003677
	Bisa09g1655	223	CDD	AP2	26	86	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1655	223	MobiDBLite	consensus disorder prediction	120	153	-	-
	Bisa09g1655	223	ProSiteProfiles	AP2/ERF domain profile.	27	84	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1655	223	SMART	rav1_2	27	90	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g1655	Bisa-ChrBisa09	24645373	24646044	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g1655	28	222	AP2-EREBP Transcription Factor Family	AT1G21910	55.556	8.40e-57	178

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa09g1655		AP2	4.4e-12	CL0081