Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1605 ATGCGTCCATCGAAGTCACGCCAAGTCCCTCCCATGCCAACGCAGACTTGCCGTCTCGACCCGAAAATCTGGCGAGCATGCGCCGGTGCATCTGTGCAAATCCCTGCTCTGCATTCTAGGGTTTATTACTTCCCGCAGGGCCATCTCGAGCACGCCCGTTCGCCTCCTAAATACCTCAATCCTCTCGTCTACTACAGGCCCCTCATTCTGTGTCGTGTCGCGGCCGTACAATTCCTTGCTGATCCTGTCACCGATGAGGTATTTGCTAAGATTCTGCTCCATCCTTTGAGTGACCACGGGCTGCATCACACCGCCAATTCTGCGGAAGAGGACGGTGAAAAGCTCGTGTCGTTTGCGAAGATTCTGACGCCTTCTGACGCCAACAATGGGGGTGGATTCTCTGTTCCGAGGTACTGTGCTGACTCTATCTTCCCGCCGCTGAACTTCGAGGACGAACGACCCACCCAGACACTGTTCGTGACTGATGTTCACGGCATCGTCTGGGAATTTCGCCACATTTATCGGGGCACGCCGAGGCGGCACTTGCTCACTACTGGCTGGAGCAAGTTTGTCAATCACAAGAAGTTGATTGCTGGTGATTCCGTGGTTTTCATGAAGAATTCGAGGGGGCAGGTGTTCGTCGGGATTCGCAGAGCTGTACGATTTTCTGGTTTTAGTGGTGCCGATTGCGCCATGTGGTGTACCCCGATCGGGGGAGCGAGCACTAGGCCTGAGAGGGAGCAGCAGGAAGAGAACAATACTGATTCAAGAGGGAGAGAAGTGTTTTCAAGAAACGGAAAGGGGAAATTGTCACCGAAGGAAGTTGCAGATGCAGCAGAATTGGCGGCACAGAATCTGCCGTTTGAGGTTGTTTATTATCCAAGGATGGGCTGGTCGGACTTTGTGGTAAAGGCGGAAGTCGTGGAGCAAGCTTGGAATGTCGCGTGGACTTCCGGAATGAGAGTCAAAATGGCTATGGAAACAGAGGATTCGTCCAGGATGACATGGTTTCAGGGGACAGTCTCTTCTGCATCTGCTCCTGATAATGGGCTTTGGCGGTGTTCTCCTTGGCGTATGCTTCAGGTTATGTGGGATGAACCTGAGGTCTTGCAGAATGCAAAGCGAGTCAGCCCTTGGGAGGTTGAACTTGTTTCCCCTATACCTTCCCCTCACACAGCATTCCTCCCTCCTGCAAAAAGGTTCAGAGCTGCTCATTTTTCTGGGGTGCCAACTGATAGAGAGGGAGACTCCTTTTCTTTGACTGGATTCACTAATTCATCAGTGGGACACTCGAATCAATCATTGTCGAGTTACAATACCTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTATCAAGTATTTCTAACTTTGAAAGTGATAATTCTAATGTGTGTACTGGTAATACCTTTGGGGACATGTTGCCAAAGATGAAAACGAGGTCAACTGAGCTAATCATTGACAGTTCTCAATCTGATAACTTGTCCCCAGATAGCCAGAACAGTTTGCATTTCTCTGGCACAGAATTTGCTGGGACACTGGGCAGCAACTCCACAAAACTCGGTGCTGGTTCAATTCAGCTATTTGGTAAGCTCATTCATTTGGAGCAGCCTGCTGAAAGTGGGTCACATGCTGCTGGTTGCACAGGAGATGAGGGCAGTAACGGCTGCAATGAGTCTGAGGGCGTGGACAACCCGCTGGATCGTTCTTTATCCTAA 1722 0.507 MRPSKSRQVPPMPTQTCRLDPKIWRACAGASVQIPALHSRVYYFPQGHLEHARSPPKYLNPLVYYRPLILCRVAAVQFLADPVTDEVFAKILLHPLSDHGLHHTANSAEEDGEKLVSFAKILTPSDANNGGGFSVPRYCADSIFPPLNFEDERPTQTLFVTDVHGIVWEFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSRGQVFVGIRRAVRFSGFSGADCAMWCTPIGGASTRPEREQQEENNTDSRGREVFSRNGKGKLSPKEVADAAELAAQNLPFEVVYYPRMGWSDFVVKAEVVEQAWNVAWTSGMRVKMAMETEDSSRMTWFQGTVSSASAPDNGLWRCSPWRMLQVMWDEPEVLQNAKRVSPWEVELVSPIPSPHTAFLPPAKRFRAAHFSGVPTDREGDSFSLTGFTNSSVGHSNQSLSSYNTFPAGMQGARHDLLSSISNFESDNSNVCTGNTFGDMLPKMKTRSTELIIDSSQSDNLSPDSQNSLHFSGTEFAGTLGSNSTKLGAGSIQLFGKLIHLEQPAESGSHAAGCTGDEGSNGCNESEGVDNPLDRSLS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1605 573 CDD B3_DNA 117 218 IPR003340 GO:0003677
Bisa09g1605 573 SUPERFAMILY DNA-binding pseudobarrel domain 112 231 IPR015300 -
Bisa09g1605 573 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Bisa09g1605 573 MobiDBLite consensus disorder prediction 541 573 - -
Bisa09g1605 573 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa09g1605 573 SMART B3_2 118 220 IPR003340 GO:0003677
Bisa09g1605 573 MobiDBLite consensus disorder prediction 244 270 - -
Bisa09g1605 573 Gene3D - 316 387 - -
Bisa09g1605 573 MobiDBLite consensus disorder prediction 554 573 - -
Bisa09g1605 573 FunFam Auxin response factor 116 220 - -
Bisa09g1605 573 Gene3D - 115 220 IPR015300 -
Bisa09g1605 573 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 542 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa09g1605 573 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Bisa09g1605 573 MobiDBLite consensus disorder prediction 239 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1605 Bisa-ChrBisa09 23967772 23971077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1605 18 573 B3 DNA Binding Superfamily AT1G77850 48.359 9.86e-172 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa09g1605 B3 2.2e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1011 05 17295990 17300106 Bisa09g1605 09 23967772 23971077 CCT
Bisa09g1605 09 23967772 23971077 Bisa09g1605 09 23967772 23971077 ECH