Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1560 ATGTCGCACTTTGGAAGATCTGGCCCTCCGGACATCAGAGACACCCACTCCCTTCTCGTTCTCAACATCACTTTCCGAACAACCGCAGACGATCTCTACCCGCTTTTCGTCAAGTACGGCAAGGTCGTCGATGTCTTCATTCCCAGAGACCGAAGGACTGGCGAATCACGAGGTTTCGCGTTTGTTCGTTATAAGTATGCGGACGAGGCACAAAAGGCAGTGGAAAAGCTTGATGGAAGAATTGTTGATGGCAGAGAAATAATGGTTCAATTCGCAAAATACGGACCTAATGCCGAGAGAATTCAGAAAGGCAGGATAGTGGAATCATCATCGAGGCCGAATGGGAGGTCAAGAAGCCGCAGCCCTCGTCCAAGGTATACAGATGACCATAGAGATAGAGACTACAGGAGGAGAAGTCGCAGTAGAAGTCGGGAAAGATATGATCGTGACAAGTACCGTGAAAGGGAAAGGGATCATCATCGTCGAAGCAGGAGCAGGAGCAGGGGCCGCAGTGCTAGTCCTGATTATCGCAAAGACCGTAAGAGAGGAAGATATAATGAGGAGCGACCATCACAAAGCAGATCTTACGATAGTGCATCTCCGGCTCGGGGTGGTTCCGGTCGTCATAGGAGTCCATCTCCACGGAGGAAGTCTCCACCAGATGGACAGCATGAAGAGAAAAAAAGTAATGAGCAATCACCAGCTCAAAAGGATGTTTCACCACAAAATCGTTCTAATGATTCTCGTAGTCCATCTCACAGATCTGATGCTGAAGAATGA 780 0.4872 MSHFGRSGPPDIRDTHSLLVLNITFRTTADDLYPLFVKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVEKLDGRIVDGREIMVQFAKYGPNAERIQKGRIVESSSRPNGRSRSRSPRPRYTDDHRDRDYRRRSRSRSRERYDRDKYRERERDHHRRSRSRSRGRSASPDYRKDRKRGRYNEERPSQSRSYDSASPARGGSGRHRSPSPRRKSPPDGQHEEKKSNEQSPAQKDVSPQNRSNDSRSPSHRSDAEE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1560 259 SUPERFAMILY RNA-binding domain, RBD 8 103 IPR035979 GO:0003676
Bisa09g1560 259 MobiDBLite consensus disorder prediction 102 259 - -
Bisa09g1560 259 Coils Coil 254 259 - -
Bisa09g1560 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Bisa09g1560 259 MobiDBLite consensus disorder prediction 234 248 - -
Bisa09g1560 259 MobiDBLite consensus disorder prediction 214 233 - -
Bisa09g1560 259 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 246 - -
Bisa09g1560 259 MobiDBLite consensus disorder prediction 121 157 - -
Bisa09g1560 259 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Bisa09g1560 259 SMART rrm1_1 17 90 IPR000504 GO:0003723
Bisa09g1560 259 MobiDBLite consensus disorder prediction 168 191 - -
Bisa09g1560 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Bisa09g1560 259 CDD RRM_SRSF2_SRSF8 18 90 - -
Bisa09g1560 259 Gene3D - 4 103 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1560 Bisa-ChrBisa09 23152350 23155675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1560 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 8.05e-10 56.6