Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1518 ATGGCGCTACTTCGTCATCTCAGCTTTCTTTCAACTGCTAATTTCTCCACTGAACACCAACTCCACTCACTCTCATTTCTTCCGAATTCTCACAATCGATCTAACTATTCCATCAGCAATCTCTCTTTTTGTCACCCACCCTTTTCCTTTAATTTTCTACGCCTGTCCCTTGCGCATACCCCAAATGTTAGAACCAAAGAAAGTTCTTATTTTGTAACTAAATTTGCCTCTACATCCCAAGAGCAAGCGCTTGATTCTTCCCCTTCAAATGTTTCCGATGAGAGCCGAGAAACGGAGGCACAAGCTGAAGAGTTTTCTAAAACCAGGTTGCTTGCCCAGAACGTACCTTGGAATAGCACCCCTGAAGACATTCGTTCTTTGTTCGAGAGGCATGGAAAAGTCCTAGACGTTGAGCTGTCTATGTACAATAAGACGAGAAACAGGGGTTTGGCATTCGTGGAAATGGGTTCGGAAGAAGAGGCTCGTGGGGCTTTCAATAGTCTGGAATCGTATGAATATGAGGGTCGCCAGCTAAAACTCTCATATGCTCGGCCAAAAAAGAAGAAAGCTCCACCTCCTGTGCAACCGAAGCCAATAACATTTAATTTGTTTGTTGGGAATTTGTCTTATGAAGCAAGGTCTAAAGATCTCAGGGAGTTTTTTGACTCGGGAAGCGGTAGTGTTGTTTCTGCAGAGGTTATATTTTATGATAACCCTAGAAAGTCGGCTGGATATGGATTTGTGTCCTTCAACTCCAAGAAAGAAGCTGAGGCTGCTCTTACTGAGTTTCAAGGGAAGGTTTTGATGGGAAGGCCAATAAGACTGTCACGTAGTAAGCAGTTTGTTAGACGACCCGTCGAGGAGGGTGCAAGGTCTGAAGATGCATCTTCTGAGATGAGTATGAATGGGGTAGAAGCAGATAAAGCAGAATGA 933 0.4394 MALLRHLSFLSTANFSTEHQLHSLSFLPNSHNRSNYSISNLSFCHPPFSFNFLRLSLAHTPNVRTKESSYFVTKFASTSQEQALDSSPSNVSDESRETEAQAEEFSKTRLLAQNVPWNSTPEDIRSLFERHGKVLDVELSMYNKTRNRGLAFVEMGSEEEARGAFNSLESYEYEGRQLKLSYARPKKKKAPPPVQPKPITFNLFVGNLSYEARSKDLREFFDSGSGSVVSAEVIFYDNPRKSAGYGFVSFNSKKEAEAALTEFQGKVLMGRPIRLSRSKQFVRRPVEEGARSEDASSEMSMNGVEADKAE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1518 310 SUPERFAMILY RNA-binding domain, RBD 108 276 IPR035979 GO:0003676
Bisa09g1518 310 PANTHER OS02G0815200 PROTEIN 30 278 - -
Bisa09g1518 310 SMART rrm1_1 109 181 IPR000504 GO:0003723
Bisa09g1518 310 SMART rrm1_1 202 276 IPR000504 GO:0003723
Bisa09g1518 310 Gene3D - 192 306 IPR012677 -
Bisa09g1518 310 MobiDBLite consensus disorder prediction 280 310 - -
Bisa09g1518 310 MobiDBLite consensus disorder prediction 280 294 - -
Bisa09g1518 310 MobiDBLite consensus disorder prediction 81 95 - -
Bisa09g1518 310 Gene3D - 61 191 IPR012677 -
Bisa09g1518 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Bisa09g1518 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 280 IPR000504 GO:0003723
Bisa09g1518 310 MobiDBLite consensus disorder prediction 81 104 - -
Bisa09g1518 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 179 IPR000504 GO:0003723
Bisa09g1518 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 274 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1518 Bisa-ChrBisa09 22466603 22468143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1518 97 273 Eukaryotic Initiation Factors Gene Family AT3G16380 30.645 1.12e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1518 09 22466603 22468143 Bisa09g1518 09 22466603 22468143 ECH