Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1516 ATGGCCAGAATACACAGAAAGCTCTTCCCTGCACCGACTACGACAAACCAAACACAAGAATGCCCTGATTTTTGTGACCCAGCTTGCCCTTACAACTGCTATTCTTTTCCAGACTACTCCTTCCCACCACCACCGCCGCCACCACCACCTTCTAATCAGATCTCGTCCTACTTGATCATCCTTGCTTCACTATTCACAGTCATTTTTGTTCTTGTTGGTTTCTACGTGATTAAAATAAAGTGCTGTGTGGACTGGCGCCGGAGGAGACCCAGTGGATCGAGTACCTCCATATCCGACGATTCCCAGGAGTTTGTTCATGAGAACCAAGTTGATCACCCTATCTGGTTGATCACCACCGTTGGTTTACACCAATCAATCATAAACTCCATAACAGTTTGTAAGTATAGAAAGGGTGAGGGATTGATTGAGGGGACGGAGTGTTCAGTGTGTTTGAATGAATTCCAGGAAGATGAAACCTTGAGATTGTTGCCAAAATGCAACCATGCCTTCCACATCCGATGTATTGACACGTGGCTGCGGTCTCATATCAACTGTCCTCTTTGTCGTGCTGCTGTTGTCTCTGACAATGTCAATCCTGAAGCTGCCGTGCCGAATTCGGGTTCGATGGAGCAAAACTCTAACAACGTGGGAAGAAATCAAGACGCCCAGATGGAGAGGAATGATGGTGAATTAGTCAGTGGGGTCTCAGAGAACAGGTCTGGTACAGGAGAAGCAGAGGAAGCCCAACAGTTCACCGATGAATCAATTTCAAAGGAGCGTCCGAGTGTTGATGAGAGTGAACAGGTTGTAGATGAAGTAGAGAGAGAGATTGGTTCTGTTTCCATGGATTCGCGGGTTGATCATATGGAGGATGAGACAGAAGGGGAGAGGATTAATCTTCTGAGGAAAGATGGTGATTGTTCGACAATGTTTAAATCAGTGCGTCGTTCCTCAGTCGCACAATATCTGCACATAAGCCCAGTTTCAATGAAAAGGTCAGTCTCCTGTAGCGCAAGGACTGTATCTGCGAGAGGCTACAGGAATCTAAATTCAAGTCTTCGTTATTAG 1068 0.4616 MARIHRKLFPAPTTTNQTQECPDFCDPACPYNCYSFPDYSFPPPPPPPPPSNQISSYLIILASLFTVIFVLVGFYVIKIKCCVDWRRRRPSGSSTSISDDSQEFVHENQVDHPIWLITTVGLHQSIINSITVCKYRKGEGLIEGTECSVCLNEFQEDETLRLLPKCNHAFHIRCIDTWLRSHINCPLCRAAVVSDNVNPEAAVPNSGSMEQNSNNVGRNQDAQMERNDGELVSGVSENRSGTGEAEEAQQFTDESISKERPSVDESEQVVDEVEREIGSVSMDSRVDHMEDETEGERINLLRKDGDCSTMFKSVRRSSVAQYLHISPVSMKRSVSCSARTVSARGYRNLNSSLRY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1516 355 SMART ring_2 147 188 IPR001841 -
Bisa09g1516 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Bisa09g1516 355 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Bisa09g1516 355 MobiDBLite consensus disorder prediction 201 222 - -
Bisa09g1516 355 Pfam Ring finger domain 146 189 IPR001841 -
Bisa09g1516 355 PANTHER RING-H2 FINGER PROTEIN ATL16 42 329 IPR044600 GO:0016567|GO:0016740
Bisa09g1516 355 FunFam RING-H2 finger protein ATL54 122 195 - -
Bisa09g1516 355 SUPERFAMILY RING/U-box 139 195 - -
Bisa09g1516 355 MobiDBLite consensus disorder prediction 201 267 - -
Bisa09g1516 355 MobiDBLite consensus disorder prediction 233 250 - -
Bisa09g1516 355 MobiDBLite consensus disorder prediction 251 267 - -
Bisa09g1516 355 CDD RING-H2_EL5-like 146 189 - -
Bisa09g1516 355 SMART FANCL_C_2 143 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1516 Bisa-ChrBisa09 22464296 22465363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1516 1 193 C3H Transcription Factor Family AT1G72220 47.768 2.34e-61 200