Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1477 ATGGCGAGGCAGAAGATCAAGATCAAGAAAATCGACAACGTAGCGGCGAGGCAGGTGACATTCTCTAAGAGGAGGCGAGGGCTCTTCAAGAAAGCGGAGGAGCTCTCTGTGCTGTGCGATGCTGAGGTTGGCCTCATTGTTTTCTCTGCTACAGGGAAGCTCTTTGATTATGCCAGCTCCAGTGTAAAGGACATCATCACAAGGTATAATCTGCACTTTCATGACATCAACAAATTGGACGGACAATATTTTGAGCTGCAGGTTAAACAAACTCATAAAACTGTACTTCTAGTTGGCGCTTTGTTTCGTTTGTTGCAGCAAGAGAATGACAACACCGGAAAATTGCGGAAGGAAGTTGCAGATAAAACTCACGAACTACGGCAGATGAAAGGTGAGGATCTTGAAGGACTAAACCTAGATGATTTGCAGCAGCTGGAGAACATGCTTGATGAAGGATTGAGTCGCGTGATACAGACTAAGGAAAAGCGGATTGTGGGTGAAATCACTGAACTTCAGGAAAAGATGGCAACGTTGTGTAAAGGAGAAAGACCTAAGACGGTGGACTCAGATGTGGGTTTACATGAAGAAGGTGTCTCATCAGAGTCCATGAATAACGTTAGTGGTCCTCCTCTTGAAGATGATTCTTCTAACACGTCTCTCAAGTTAGGTGAAGAGTACTCAAGTGGCTCAGAAGGAGATGATGAATATGATAGGGATAATTATGATTCTTCTGACAATGAAGATGATCATCTATTTGACAAATATATTGATCTTATACCAAAGCAAGAAGTGAATCAAATGCAGCTATCTCAGGATATCATTATAGCCAATGATGATGAAGATGACAAGTATCATTCTAAAGAGATTCATAGTGTTGTAGAATCTGAAAAGGATGAAAATCAAGGCCAAATGAAAAGAAAATTGAGATGGGCTCAATTCAATGAAAGCTTATAG 954 0.413 MARQKIKIKKIDNVAARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSATGKLFDYASSSVKDIITRYNLHFHDINKLDGQYFELQVKQTHKTVLLVGALFRLLQQENDNTGKLRKEVADKTHELRQMKGEDLEGLNLDDLQQLENMLDEGLSRVIQTKEKRIVGEITELQEKMATLCKGERPKTVDSDVGLHEEGVSSESMNNVSGPPLEDDSSNTSLKLGEEYSSGSEGDDEYDRDNYDSSDNEDDHLFDKYIDLIPKQEVNQMQLSQDIIIANDDEDDKYHSKEIHSVVESEKDENQGQMKRKLRWAQFNESL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1477 317 MobiDBLite consensus disorder prediction 180 249 - -
Bisa09g1477 317 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Bisa09g1477 317 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa09g1477 317 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa09g1477 317 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa09g1477 317 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa09g1477 317 MobiDBLite consensus disorder prediction 180 195 - -
Bisa09g1477 317 ProSiteProfiles K-box domain profile. 105 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa09g1477 317 MobiDBLite consensus disorder prediction 198 225 - -
Bisa09g1477 317 FunFam Transcription factor, MADS-box 13 83 - -
Bisa09g1477 317 SUPERFAMILY SRF-like 3 71 IPR036879 GO:0003677|GO:0046983
Bisa09g1477 317 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bisa09g1477 317 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa09g1477 317 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa09g1477 317 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa09g1477 317 Coils Coil 142 162 - -
Bisa09g1477 317 Pfam K-box region 107 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa09g1477 317 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1477 Bisa-ChrBisa09 21581156 21588387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1477 1 226 MADS-box Gene Family AT2G22540 45.312 9.07e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa09g1477 K-box 1.5e-12 No_clan