Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1464 ATGTACGGACACATCCCATCGATGAATGTCACTAATCGGATCAGCACCGGCGAAGACGCTGACGGCGTTGGCATTGGCGCCGAGTCCATTGACAATCACCACGTTCATTACGAAACGCAAGCTCTCGAAGACGGTAGTGGTGGAGTGGGCGGCGTGGTAGAGGATGGTAACTCTGATACCGTGTATGTTTCCGGCAGTGGTTCTGAAATGTCCATCCAACACGAGGATTCTAGCCAACTCACGCTGTCATTTCGTGGCCAAGTATATGTTTTTGATTCTGTGACACCTGAAAAGGTTCAAGCGGTATTATTACTGTTGGGTGGATGTGAACTACCATCAGGTTCGCATGAGGATATAGCACCTTCAAATCCGAGGGGTGCAATGGAGTACCCTGGAAGATGTAGTCAACCACAGCGAGCAGCCTCTTTAAACAGGTTTCGTCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCTCTCAGGATGCACCGTAATAAGGGCCAATTTACTTCGGCTAGGAAACAAGATGGAGCTAATAGTTGGGGTACAGTCCAGGAGTCGGGGCAGGATGATGGTCAATCAGAAATCTTATGCGCGCATTGTGGCACAAGTTCAAAATCCACCCCAATGATGCGGCGAGGACCAGCTGGTCCAAGGTCACTCTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTACTCTGAGGGACCTTTCCAAGAAGAACCAGGAACATTCTCTTGCATCAGCTGAGCGGGTTGATGAAGGGAATGAATCAGACTGTCGGACTGCCATCCCTGCACATAAGCCTTTCTCTGATACTGATAACCCAGCATAG 864 0.4884 MYGHIPSMNVTNRISTGEDADGVGIGAESIDNHHVHYETQALEDGSGGVGGVVEDGNSDTVYVSGSGSEMSIQHEDSSQLTLSFRGQVYVFDSVTPEKVQAVLLLLGGCELPSGSHEDIAPSNPRGAMEYPGRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSARKQDGANSWGTVQESGQDDGQSEILCAHCGTSSKSTPMMRRGPAGPRSLCNACGLFWANRGTLRDLSKKNQEHSLASAERVDEGNESDCRTAIPAHKPFSDTDNPA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1464 287 PANTHER GATA TRANSCRIPTION FACTOR 28 28 266 IPR045280 GO:0006355
Bisa09g1464 287 CDD ZnF_GATA 207 252 IPR000679 GO:0006355|GO:0043565
Bisa09g1464 287 MobiDBLite consensus disorder prediction 250 271 - -
Bisa09g1464 287 Pfam CCT motif 139 181 IPR010402 GO:0005515
Bisa09g1464 287 MobiDBLite consensus disorder prediction 178 199 - -
Bisa09g1464 287 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Bisa09g1464 287 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Bisa09g1464 287 Gene3D - 198 261 IPR013088 GO:0006355|GO:0008270
Bisa09g1464 287 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Bisa09g1464 287 MobiDBLite consensus disorder prediction 180 199 - -
Bisa09g1464 287 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Bisa09g1464 287 MobiDBLite consensus disorder prediction 250 287 - -
Bisa09g1464 287 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 253 - -
Bisa09g1464 287 Pfam tify domain 76 107 IPR010399 -
Bisa09g1464 287 SMART tify_2 73 108 IPR010399 -
Bisa09g1464 287 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Bisa09g1464 287 ProSiteProfiles GATA-type zinc finger domain profile. 207 261 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1464 Bisa-ChrBisa09 21305605 21310032 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1464 47 262 Tify Gene Family AT4G24470 60.181 4.90e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa09g1464 CCT 4.8e-15 CL0281