Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1450 ATGTCGTCATCACGAGCAGTACAGCTGCACATAGAAGACAATCATGTGGTTATGGACAATGGCATACTGCAAGTGTATTTATCCAAACCGGGAGGCTATGTCACTAAAATACGATATAATGGCATGGATAATCTGCTTGAAGTTCTCAACAAAAGAGGTGACAGAGGGTACTGGGACGTTGTTTGGAGTGAAGCAGACAGGACAGGAACAACAGGGATATTCGAGCGGATCGTGGGAACAAGCTTTCGGGTGATAGTGGAAACTGTGGATCAGGTGGAGATCTCATTTACGAGAATTTGGGATCCATCTCTCAAGGGAAAGCTTTCGCCGCTGAATATAGACAAAAGATACGTGATGCTTCGTGATTCCTCAGGCTTCTACTCATACGCCATTTTTGAACACCTCAAAGAGTGGCCTGCTTTCAACATACCCCAGATCAGGATCGTGTTCAAGCTACGAAAAGACAAGTATCATTACATGGCTGTAGCTGATAATAGGCAAAGATTCATGCCTCTTCCAGATGACAGATTACCTGGAAGAGGAAAAGAACTGGATCCCCCAGAAGCAGTTTTACTAGTCAATCCCGTGGAGCCAGAGTTCAAGGGAGAGGTGGATGACAAGTACCAGTACTCAAGCGAGAACAAAGATCTCAAGGTGCATGGGTGGATAAGCTCCGAACCCGAAACTGCACCACCCATGGGCTTCTGGGTCATCATACCCAGCAATGAATTCCGTTCAGGAGGACCTGTCAAACAGAACCTTACATCCCATGTGGGCCCCATCAGTCTAGCCATGTTTCTAAGTGCTCATTATGCAGGGGAGGACATAGTTCTGAAACTCCAACCAAATGAGCCATGGAAGAAAGTTTTGGGGCCAGTGTTTGTGTATCTGAATACTTTGTTGGATGGTGAAGACCCACTCTTGCTCTGGGAGGATGCCAAAGATCAGATGACGAAGCAAGTCCAAAGTTGGCCTTATGATTTCCCAGCTTCAGAGGACTTTCAAAAGTCTAACCAACGAGGCACTGTTTGTGGCACATTACGAGTTCGAGACAGGGGCTTAAGTGACGACTATATATCAGCGCAAGGTGCATATGTAGGTCTTGCACCACCAGGAGACGTTGGATCATGGCAGAGAGAATGCAAGGGGTACCAATTCTGGACAAGAGCAAACGAGGAAGGCTACTTCTCAATTACCAATATACGTAGTGGGGATTATAATCTCTATGCTTGGGTTCCTGGTTTCATTGGAGAATATTGGAATAATGTTTTCCTCACCATCACCCCAGGTAGTGAAATAAATGTTGGTGACATTGTTTATGAGCCTCCAAGATCTGGTCCAACGTTATGGGAGATAGGCATTCCCGATCGCTCTGCTTTTGAATTCTATGTCCCTGATCCTAATCCAATGTACATCAACAAGCTTTATGTCAACCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGATCTATACCCAATTGAGGATTTGGTTTATACAATTGGTGTTAGTGACTATCAGAAAGATTGGTTTTTTGCACACGTCACCAGGAAGAAAGACGATGGGACTTTTCAAGGAACTACATGGCAAATTAAGTTCAAGCTTGACAATGTAGTGGGAAGTGGAACCTATACACTACGATTGGCGCTAGCATCTGCAAATGCAGTCGAATTACAGGTTAGAGTGAATGATCGAGAGCAAGACCCTCCTGTATTCACAAGTGGGAAGATTGGGAAGGACAACGCAATTTCTAGGCATGGAATCCATGGACTCTACTGGCTATTCAACGTCGACATACCAGGTGGTCTTATGGTGGTTATGAACAAGGAAAAAGTGCAAGTGTATTTATCCAATCCGGGAGGATTTGCCACTGAAATACGATATAATGGCGTGGATAATCTGCTTGAAGTTCTTAACGAAAGTGATAACAGAGGGTTCTGGGACCTTACTTGGAGCGAAGCAGGCAGTACAGGAACAACAGGGATAACCGAGCAATACGTTATGCTTCGTGATTCCTCAGGCTTCTACTCATACGCCATTTTTGAACACCTCAAAGAGTGGCCTGCTTTCAACATACCCCAGATCAGGATCGTGTTCTCGCTACGAAAAGACAAGTATCATTACATGGCTTTACCCGATAATAGGCAAAGATTCATGCCTCTTCCAGACGACAGATTATCTGGAAGAGGAATAGAACTAAACCCCCTAGAAGCAGTTTTACTATACAATCCTGTGTAG 2250 0.4471 MSSSRAVQLHIEDNHVVMDNGILQVYLSKPGGYVTKIRYNGMDNLLEVLNKRGDRGYWDVVWSEADRTGTTGIFERIVGTSFRVIVETVDQVEISFTRIWDPSLKGKLSPLNIDKRYVMLRDSSGFYSYAIFEHLKEWPAFNIPQIRIVFKLRKDKYHYMAVADNRQRFMPLPDDRLPGRGKELDPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLKVHGWISSEPETAPPMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVLGPVFVYLNTLLDGEDPLLLWEDAKDQMTKQVQSWPYDFPASEDFQKSNQRGTVCGTLRVRDRGLSDDYISAQGAYVGLAPPGDVGSWQRECKGYQFWTRANEEGYFSITNIRSGDYNLYAWVPGFIGEYWNNVFLTITPGSEINVGDIVYEPPRSGPTLWEIGIPDRSAFEFYVPDPNPMYINKLYVNHPDKFRQYGLWERYADLYPIEDLVYTIGVSDYQKDWFFAHVTRKKDDGTFQGTTWQIKFKLDNVVGSGTYTLRLALASANAVELQVRVNDREQDPPVFTSGKIGKDNAISRHGIHGLYWLFNVDIPGGLMVVMNKEKVQVYLSNPGGFATEIRYNGVDNLLEVLNESDNRGFWDLTWSEAGSTGTTGITEQYVMLRDSSGFYSYAIFEHLKEWPAFNIPQIRIVFSLRKDKYHYMALPDNRQRFMPLPDDRLSGRGIELNPLEAVLLYNPV 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1450 749 CDD RGL4_N 12 299 - -
Bisa09g1450 749 Pfam Rhamnogalacturonate lyase family 7 204 IPR010325 -
Bisa09g1450 749 Pfam Rhamnogalacturonate lyase family 608 664 IPR010325 -
Bisa09g1450 749 Pfam Rhamnogalacturonate lyase family 666 749 IPR010325 -
Bisa09g1450 749 Gene3D - 445 623 - -
Bisa09g1450 749 CDD RGL4_C 450 625 - -
Bisa09g1450 749 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 609 659 - -
Bisa09g1450 749 SUPERFAMILY Galactose-binding domain-like 445 609 IPR008979 -
Bisa09g1450 749 Gene3D - 336 435 - -
Bisa09g1450 749 CDD RGL4_M 339 438 IPR029413 -
Bisa09g1450 749 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
Bisa09g1450 749 FunFam Rhamnogalacturonate lyase B 336 435 - -
Bisa09g1450 749 Pfam Polysaccharide lyase family 4, domain III 448 610 IPR029411 -
Bisa09g1450 749 SUPERFAMILY Galactose mutarotase-like 13 259 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bisa09g1450 749 Gene3D - 6 276 IPR014718 GO:0030246
Bisa09g1450 749 SUPERFAMILY Starch-binding domain-like 339 438 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1450 Bisa-ChrBisa09 21034982 21044043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1450 606 749 Polysaccharide Lyase AT1G09890 48.295 1.61e-40 156