LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g1407	ATGAGGGAAGTGGGGTTGATGAGGAGAGTGAGGAGAGTGAGTAATGCTGGATCTCTGCGTCACCGTCTTCCGTCGCTTGACTTGGATCCTGTCCTTCGGTACTCTCTTTCCATCCATCACGCACTCATGGCGATTGCAACAGAGACACAATCTCAAGACAAGACTTCTTCAGAGGTTTCAGCCGTGGAGGAAAGAAGGTGGACTCTTAACGACTTTGACGTTGGAAAGCCTCTCGGAAGGGGAAAATTTGGCCATGTCTATTTGGCCAGAGAAAAGAGAAGTAATCATGTAGTTGCTCTAAAAGTCCTCTTTAAGAGCCAATTGCAGCAGTCCCAAGTTGAGCATCAACTTCGCCGAGAAGTTGAAATCCAAAGTCATCTGCGACATCCCAACATCTTACGCCTTTATGGATACTTTTATGACCAGAACCGAGTTTATCTGATTTTAGAGTATGCATTCAAAGGTGAACTATATAAGGAATTACAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACTTATGTAGCATCATTGGCGCGAGCACTCATATATTGCCATGGAAAGCATGTAATACATAGGGATATTAAACCAGAGAATCTTCTTATTGGTGCACAGGGTGAGCTGAAGATAGCAGACTTTGGGTGGTCGGTCCACACATTCAATCGCAGGCGGACCATGTGTGGTACACTGGATTACCTACCTCCTGAGATGGTGGAGAGCGTAGAACATGATGCAAGTGTGGATATATGGAGCCTTGGTGTCCTGTGCTATGAATTTCTCTATGGGGCACCTCCTTTTGAGGCTGTAGAACATTCTGAGACATATAGAAGGATTGTAAAAGTGGATCTCAAGTTCCCTCCTAGACCAGTTGTGTCCTCCTCTGCGAAGAACCTAATCAGTCAGATGCTGGTCAAGGATTCCTCCCAACGTCTACCATTGCAAAAACTTCTTGAACATCCCTGGATTGTTCGGAATGCTGAGCCCTCTGGTGTCTATAGGGCCTAG	1008	0.4554	MREVGLMRRVRRVSNAGSLRHRLPSLDLDPVLRYSLSIHHALMAIATETQSQDKTSSEVSAVEERRWTLNDFDVGKPLGRGKFGHVYLAREKRSNHVVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQNRVYLILEYAFKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGAPPFEAVEHSETYRRIVKVDLKFPPRPVVSSSAKNLISQMLVKDSSQRLPLQKLLEHPWIVRNAEPSGVYRA	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g1407	335	SMART	serkin_6	72	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g1407	335	Gene3D	Phosphorylase Kinase; domain 1	60	155	-	-
	Bisa09g1407	335	Gene3D	Transferase(Phosphotransferase) domain 1	156	331	-	-
	Bisa09g1407	335	CDD	STKc_Aurora	71	324	-	-
	Bisa09g1407	335	SUPERFAMILY	Protein kinase-like (PK-like)	56	327	IPR011009	-
	Bisa09g1407	335	FunFam	Aurora kinase A	64	155	-	-
	Bisa09g1407	335	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	191	203	IPR008271	GO:0004672\|GO:0006468
	Bisa09g1407	335	ProSiteProfiles	Protein kinase domain profile.	72	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g1407	335	Pfam	Protein kinase domain	73	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g1407	335	PANTHER	SERINE/THREONINE-PROTEIN KINASE IAL-RELATED	50	334	IPR030616	GO:0004672
	Bisa09g1407	335	ProSitePatterns	Protein kinases ATP-binding region signature.	78	101	IPR017441	GO:0005524
	Bisa09g1407	335	FunFam	serine/threonine-protein kinase Aurora-1	156	331	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g1407	Bisa-ChrBisa09	20297195	20302755	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g1407	63	334	CBL-interacting serine-threonine protein kinases	AT5G10930	35.842	2.61e-55	185

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Aur	Bisa09g1407		Pkinase	1.4e-72	CL0016