Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1380 ATGGAAGGCCCCCACTATTTGCAGACCGGCTTCTGCGCCCAATTCCCCTCCTCCGACCTCCCCAACATGACCCCCGTCGACTCCTTCGTCGTCGACGACCTCCTCGACTTCCCCAACGACGTAGACGACCCCCTCCTCCCCGACCCCCCTCGCTCCCTCCCCACCGATTCTAATTCCGCCCTCACCCCCCTCCACAGCTCCAATTCCTCCTCCTTCTCTGGCTCCGACCCCACTTTCCTCCGCGATGTTGACCTCTGCGTCCCCGTCCCGTATGATGATTTGGCGGAGCTGGAATGGCTTTCGAATGTGGTGGAGGAATCGTTCTCGAGCGAGGACCTGCAGAAGCTGCAGCTGATAACCGGGATGAAAGCCCGAAACGACGTCGAAGCCTCAGAAACCCATGAATTCCACGCCGAAACTAACCAAAATGTCAACAACAACAATAACAATAACAGCAACAGCAACAACAGCCCAATCTTCAACTCGGAAGTGTCGGTTCCAGCGAAGGCTCGCAGCAAGCGGTCACGTGGCTCACCATGCAACTGGACCTCCCGCCTCCTCCTCCTCTCTCCGACTCCGTCTCCGTCTCCGGCGTCCTCCTCCTCCGAGCCCGACGTCGTCCTTCCGGTCGCCCCCGCGAACCCCTGGAAGAAGCCGGGCAAGGCTGCTCCAAGGAGGAAGGACGGCGGAGACGGCACCGGCGGCGAGGGGCGGAAGTGCCTGCATTGCTCCACGGACAAGACGCCGCAATGGAGGACGGGGCCCATGGGCCCGAAAACGCTCTGCAATGCGTGCGGAGTGAGGTACAAGTCGGGGAGGCTGGTGCCCGAGTACCGGCCAGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCGAACTCTCACCGGAAGGTGATGGAGCTGAGGCGCCAGAAGGAGATGCTGATCAGAGGGCAACAGCCGCATCAGAATCAGCAACAACTGCTCCAGAATCAGTTTCTGCAACATCCGAGCATGCTGTTCGACTTCGACGTGCCGAACGGGGACGATTATTTGATCCACCAACACGTGGGTCCCGATTTCCGGCAGCTCATATAG 1077 0.6045 MEGPHYLQTGFCAQFPSSDLPNMTPVDSFVVDDLLDFPNDVDDPLLPDPPRSLPTDSNSALTPLHSSNSSSFSGSDPTFLRDVDLCVPVPYDDLAELEWLSNVVEESFSSEDLQKLQLITGMKARNDVEASETHEFHAETNQNVNNNNNNNSNSNNSPIFNSEVSVPAKARSKRSRGSPCNWTSRLLLLSPTPSPSPASSSSEPDVVLPVAPANPWKKPGKAAPRRKDGGDGTGGEGRKCLHCSTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMLIRGQQPHQNQQQLLQNQFLQHPSMLFDFDVPNGDDYLIHQHVGPDFRQLI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1380 358 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Bisa09g1380 358 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Bisa09g1380 358 Gene3D - 234 284 IPR013088 GO:0006355|GO:0008270
Bisa09g1380 358 PANTHER GATA TRANSCRIPTION FACTOR 23 318 - -
Bisa09g1380 358 MobiDBLite consensus disorder prediction 129 238 - -
Bisa09g1380 358 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 298 - -
Bisa09g1380 358 MobiDBLite consensus disorder prediction 137 163 - -
Bisa09g1380 358 FunFam GATA transcription factor 231 319 - -
Bisa09g1380 358 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Bisa09g1380 358 PIRSF Txn_fac_GATA_plant 12 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bisa09g1380 358 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Bisa09g1380 358 MobiDBLite consensus disorder prediction 52 76 - -
Bisa09g1380 358 MobiDBLite consensus disorder prediction 41 76 - -
Bisa09g1380 358 MobiDBLite consensus disorder prediction 221 238 - -
Bisa09g1380 358 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Bisa09g1380 358 MobiDBLite consensus disorder prediction 176 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1380 Bisa-ChrBisa09 19855745 19857283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1380 29 358 C2C2-Gata Transcription Factor Family AT5G25830 50.568 4.30e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa09g1380 GATA 3.3e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1380 09 19855745 19857283 Bisa09g1380 09 19855745 19857283 ECH