LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g1335	ATGTTTTCGCCGGCTATCGCGCCCCCGCAGCCGGCATTCGATGCTAATCCTCCGTCGTTACCAGTGCCTCCGGTGTCTACACTGGCTTCAGCACCTCATCTTCACTCGCCGGCGACTTCAGTTCCTCCGGTGGTATCTCCGGCGGCGTCACGCCATTCGAATTCAGCATCTCCGGTTAACTCACCGGCGACTTTACTTTCTCCGGTGTCATCCCCTTCGTCGCCCGACATTATAGTCGTTCCAGCTTCTCCGCCTCCGATAATGTCGAATGACACTAAAGATCCGCCACCATCATCATCGCCTCCGTCTCCTCCTAGTTTTCCCCTCCCGGCGCAGCCTTTGCCTTCGCCGGTGGTCTCAGCACCGCCGCCCCTGCCATTTCCATTTCCCTCCGCACCTCGAACAATAAATTCCCCTCTAACAATCACTTTTCGTCCACCTTCAGCTCCCGCATTACCGAACGCGAAGTCTCCGGTACCGCCAATAGCTTCTTCGCCACCTCCGGTGAATCCAATTGCGCCTTTTTTTCCTGTACCGCCTCCTTCTTGGCCAATTATTATTCCATTCACAAATCCTCCTCCTCCATCGTCGGCAACACCGTCAAGCCCCACACTGCCGGCACCGGCATCAGCATCGGCATCGGAACCACAAATGCCTTCATCGAAAAATTCTAGCGTGACCCCGGAGGGGCAGCTTCCAGCGGCGCCGCCAGCCGGAGTTTTGCCGTTGGCGGTAGGAGTTCAAAAGCCTCCAATCTTTCATATGTCAGCTGGGCTCATAATTGGGCTTGCAATTGGTGGAGCTATCCTTCTTGGGCTTGTTCTTGCAATTGTATCATTTTTTTGTGCCTGCCATCGGCACAGAAGGAAAAGGAAGCATGATCTTCTTGAGACATCACGCAATGCAGGATCAAAAGGGTCTCATGTTATTCAAGTGGAAGAAAATCCAGTGGTGCCACCATATCTCAGTAAAGGAGGTAGTGCTTCTGTCCCTATTAAATCAAAGCCTGAGAATCCAATTCCTACCCAAAGCATTGGCTTCAATTCTTTGAATGGTATTTTCACAAATGAGGAACTTTTAGTAGCCACTAATGGCTTCTCAGAGTCCAACCTTCTTGGACAAGGTGGTTTTGGGTATGTATACAAAGGAGTTCTTCCAAGTGGAAAGGAAATTGCAGTTAAGAAGTTAAAAACTGGAAGCCATCAAGGAGAGAGAGAATTCCAAGCTGAGATTGAAACGATTAGCAGGGTGCATCATAAACATCTTGTTGAGTTGGTTGGGTACTGCGTTACAGGGACAGACAGATCGCTTGTTTATGAATTCGTTCCAAATAACACACTGGAATCCCACTTGCATGGTGAAGGTAGACCTGTCATAGAGTGGGCAACCAGACTTAAAATTGCCCTTGGGTCAGCAAGAGGGCTGGCATATCTACATGAAGATTCCACTCTGAGATATATCATAATGTTCTCTGGTGTGTATCAGGTTTCTGACTTTGGTCTGGCCAAAATCTTTCCTAACGCAGATAGTTGTACTCATGTCACCACCAGAGTTGTGGGAACCTTTGGGTATCTGGCGCCAGAGTATGCATCAAGTGGTAAATTAACAGATAAATCAGATGTATATTCATTTGGAGTGATCCTTCTAGAACTTATAACGGGACGTCCACCTATAACTGCAACAGATTCCTCAAGGAATCAGAGCCTCGTTGAGTGGGCTAGACCTTCGCTCGCTCAAGCCCTAAAGGATGGTGAGTTCAGCAATCTTGTTGATCCAAGATTGGAGAAAAATTACAGGGATGATGAGATGGCCAGAATGATTACCTGTGCAGCTGCTTGTGTGCGCCATTCAGCCAGGCTTCGACCGCGTATGACCCAAATGGTAGGTGCCTTAGAAGGACTGGTTTCTCTTGCGGATATTGTTGAAGACATAAGACCGGAATATACCAAATTATACAGTTGGTCAGGAAGTTCAAATTATGATGCCTACAAATACCAGGAGGACATTAGAAATTTCAATTTAGCATTATCAAGTCATAAGTACAGCTTTTGTGGGAATAGTGAAAACACCAGCACTTACGGCGTTCACATATCAGATTCAAGTAGCGAGGATCAGCAAACAAACCAAAACACATAG	2136	0.4771	MFSPAIAPPQPAFDANPPSLPVPPVSTLASAPHLHSPATSVPPVVSPAASRHSNSASPVNSPATLLSPVSSPSSPDIIVVPASPPPIMSNDTKDPPPSSSPPSPPSFPLPAQPLPSPVVSAPPPLPFPFPSAPRTINSPLTITFRPPSAPALPNAKSPVPPIASSPPPVNPIAPFFPVPPPSWPIIIPFTNPPPPSSATPSSPTLPAPASASASEPQMPSSKNSSVTPEGQLPAAPPAGVLPLAVGVQKPPIFHMSAGLIIGLAIGGAILLGLVLAIVSFFCACHRHRRKRKHDLLETSRNAGSKGSHVIQVEENPVVPPYLSKGGSASVPIKSKPENPIPTQSIGFNSLNGIFTNEELLVATNGFSESNLLGQGGFGYVYKGVLPSGKEIAVKKLKTGSHQGEREFQAEIETISRVHHKHLVELVGYCVTGTDRSLVYEFVPNNTLESHLHGEGRPVIEWATRLKIALGSARGLAYLHEDSTLRYIIMFSGVYQVSDFGLAKIFPNADSCTHVTTRVVGTFGYLAPEYASSGKLTDKSDVYSFGVILLELITGRPPITATDSSRNQSLVEWARPSLAQALKDGEFSNLVDPRLEKNYRDDEMARMITCAAACVRHSARLRPRMTQMVGALEGLVSLADIVEDIRPEYTKLYSWSGSSNYDAYKYQEDIRNFNLALSSHKYSFCGNSENTSTYGVHISDSSSEDQQTNQNT	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g1335	711	Gene3D	Transferase(Phosphotransferase) domain 1	442	645	-	-
	Bisa09g1335	711	CDD	STKc_IRAK	372	634	-	-
	Bisa09g1335	711	MobiDBLite	consensus disorder prediction	10	25	-	-
	Bisa09g1335	711	MobiDBLite	consensus disorder prediction	203	230	-	-
	Bisa09g1335	711	SUPERFAMILY	Protein kinase-like (PK-like)	349	631	IPR011009	-
	Bisa09g1335	711	MobiDBLite	consensus disorder prediction	78	133	-	-
	Bisa09g1335	711	ProSiteProfiles	Protein kinase domain profile.	366	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g1335	711	MobiDBLite	consensus disorder prediction	1	139	-	-
	Bisa09g1335	711	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	342	441	-	-
	Bisa09g1335	711	MobiDBLite	consensus disorder prediction	189	233	-	-
	Bisa09g1335	711	Pfam	Protein tyrosine and serine/threonine kinase	370	629	IPR001245	GO:0004672\|GO:0006468
	Bisa09g1335	711	FunFam	proline-rich receptor-like protein kinase PERK8	442	646	-	-
	Bisa09g1335	711	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	271	674	IPR047117	-
	Bisa09g1335	711	MobiDBLite	consensus disorder prediction	46	77	-	-
	Bisa09g1335	711	Gene3D	Phosphorylase Kinase; domain 1	332	441	-	-
	Bisa09g1335	711	ProSitePatterns	Protein kinases ATP-binding region signature.	372	395	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g1335	Bisa-ChrBisa09	19295779	19299842	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g1335	301	708	Trihelix Transcription Factor Family	AT4G32710	55.609	4.09e-129	398

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Bisa09g1335		PK_Tyr_Ser-Thr	1.1e-35	CL0016