Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1304 ATGTCTCGAGTCTATATTGGTAACTTGGATCCAAGAGTTACTGAGAGAGAACTTGAAGATGAATTTCGTGTTTTTGGAGTCATCCGGAGTGTGTGGGTTGCACGGAGGCCACCTGGTTATGCTTTTATTGACTTTGATGATCGTAGGGACGCACAGGATGCTATTCGTGAATTAGATGGTAAGAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGGCGTGGAGGTGGTGGTGGTGGGCGTGGAGGTGGTCGTAGTCGCTCAGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGCGAATGTCGGATGCGTGGTGGTTCTGGAAAACGTCGTAGTCGTAGTCCACCACGATTTCGCAGGAGCCCAAGTTATGGGCGAAGGAGTTATAGTCCTCGTGGGCGGTCTCCTAGGCGCCGCAGTTTGTCACCTCGTGGTCGTAGCTATAGCAAGTCACCTCCTTACCGTGGGCGTGAGGAGCTACCATACTCTAACGGAACTGGCGTAAGGGATCGAGTCCGAAGCAGAAGTTGA 567 0.5132 MSRVYIGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGGGGGRGGGRSRSGGSDLKCYECGEPGHFARECRMRGGSGKRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSKSPPYRGREELPYSNGTGVRDRVRSRS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1304 188 SMART rrm1_1 3 69 IPR000504 GO:0003723
Bisa09g1304 188 CDD RRM_SRSF3_like 3 71 - -
Bisa09g1304 188 Gene3D - 98 152 - -
Bisa09g1304 188 FunFam Serine/arginine-rich splicing factor RSZ22A 96 156 - -
Bisa09g1304 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Bisa09g1304 188 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Bisa09g1304 188 Gene3D - 1 97 IPR012677 -
Bisa09g1304 188 MobiDBLite consensus disorder prediction 104 119 - -
Bisa09g1304 188 MobiDBLite consensus disorder prediction 66 188 - -
Bisa09g1304 188 FunFam serine/arginine-rich splicing factor RSZ22-like 1 98 - -
Bisa09g1304 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Bisa09g1304 188 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 167 - -
Bisa09g1304 188 SUPERFAMILY RNA-binding domain, RBD 3 94 IPR035979 GO:0003676
Bisa09g1304 188 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Bisa09g1304 188 ProSiteProfiles Zinc finger CCHC-type profile. 99 114 IPR001878 GO:0003676|GO:0008270
Bisa09g1304 188 SUPERFAMILY Retrovirus zinc finger-like domains 92 116 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1304 Bisa-ChrBisa09 18785095 18787918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1304 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 7.80e-07 46.6