Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1295 ATGGATGAATGTGCTGGTAGAAGAACTCTTGATAGGATGGTAGTCTCTAGAAAGGGGATGCCTCATTTATTAAGAGATACTGCTAATACTAGGAATCAAAATGGTCAGTTGTGCAGCCGACCTAATTGCAGTAGCAGAGTCCACTCTTCTAAAGGTTCTCAGACTGGTTCTTCTAGAAAAGGTAAATCTTTGAGGCCTGCAATTCAACCCTCTTCAAGTGGCAAGAAAGCAGTTGGAAGTTCCTCTAGAACATTTTCAGGAACTATTAATCCAGGAAAGTCCCTTAAAGGGCCTCAGGAAACATTATCCTCTAGGTTAGAGAGAGAGTCATGTGAAGCTAGTAGTGTACAGGACGGACTGGAAGATTCAGATCTCATCCCTCGATCTGCAACTTTTCAAAGTCGGCTTCAAACTGAATTGGAAAATGCAGAGTCTGATAATGGCATGCTGATGGAAGCGAACCCTAGTGTTGTATTAAATACAAGATCGCAGAGGAATTTTCATCAGCCTGGATTGCGTGGTCCAGAAACTAAAAGTATTGGCCCAGTGACACGTGCTGGTACCAGCAGATATGAGTTAAGAAACCTGAGATGCAACTCTATATCTGATGTCATCCCAGCAGGTTCATCTTCAGATTCAAACCTGAATAGAAGGAATGTTTTGTTTAAGAAAAAGAATTGTGAAGGGGAAAGTAGTTCTGCGACTAGAGGGAAGATGAGTGGACCTTTTATGGAAGGACGAAATTCTGGTTCTGGAACTGGCATATCTATTTCTGATTCAAGAAGATTAAAAAATATTCCACCTCACAGGGACAGCAAAACTGCATCAGTTAGGACACAAAGATCTTTAAGTGGTAATCCTAGGGGAAGGCTTTCTATCCAAGGAAATGAAAACCCTGTGCAACTAGAGCAATCCCCTATTGTATTACCGCCTTTGCATAATTTTGATGACCTTAATGCTCCTGGTTTTTCACATCATACTTCTGCTGAGTCTCCTTTAATTCAGTTGAGTAGTAGACCAAATACAAGCAATGAACAGTTACGCGGTGTTATGACTGCATCTCCTGCTGAATATGACATCCGTTGTTCTCTGGTAAATCGGGATAGTTTCCGGCACTACAACATGGATGGTATTGCTGAGGTATTATTGGCACTTGAGAGAATTGAACAAGATGAAGAGCTAACACATGAGGAAATTCTTTTATTGGAGACAAACTGGCTCCTTAATGGTCTCCACTTCTATGATCAGCATAGAGACATGCGATTGGATATTGATAATATGTCATACGAGGAACTATTAGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTTTAACAGAGGAAGCACTGTCAGAATGCCTAAAGAGAAGCACCTATCAGTCTGCTGCACCAACGGATGATGCTGAGAGATGCAATGAAAATAAGGATGATATCAAATGCAGCATCTGCCAGGTTGAATATGTGGTTGGAGATGAAGTGGGAAATCTGCAGTGTGAGCATAGATATCATGTGGCTTGCATACAGCAATGGCTGCGGCTGAAGAACTGGTGCCCTATATGCAAAGCGTCTGCAGCACCTTCAAATTCATCTTCATCTTCTTTATCCTCTTGA 1614 0.4195 MDECAGRRTLDRMVVSRKGMPHLLRDTANTRNQNGQLCSRPNCSSRVHSSKGSQTGSSRKGKSLRPAIQPSSSGKKAVGSSSRTFSGTINPGKSLKGPQETLSSRLERESCEASSVQDGLEDSDLIPRSATFQSRLQTELENAESDNGMLMEANPSVVLNTRSQRNFHQPGLRGPETKSIGPVTRAGTSRYELRNLRCNSISDVIPAGSSSDSNLNRRNVLFKKKNCEGESSSATRGKMSGPFMEGRNSGSGTGISISDSRRLKNIPPHRDSKTASVRTQRSLSGNPRGRLSIQGNENPVQLEQSPIVLPPLHNFDDLNAPGFSHHTSAESPLIQLSSRPNTSNEQLRGVMTASPAEYDIRCSLVNRDSFRHYNMDGIAEVLLALERIEQDEELTHEEILLLETNWLLNGLHFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRSTYQSAAPTDDAERCNENKDDIKCSICQVEYVVGDEVGNLQCEHRYHVACIQQWLRLKNWCPICKASAAPSNSSSSSLSS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1295 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 527 IPR013083 -
Bisa09g1295 537 MobiDBLite consensus disorder prediction 16 124 - -
Bisa09g1295 537 ProSiteProfiles Zinc finger RING-type profile. 481 522 IPR001841 -
Bisa09g1295 537 MobiDBLite consensus disorder prediction 26 101 - -
Bisa09g1295 537 MobiDBLite consensus disorder prediction 246 260 - -
Bisa09g1295 537 SMART ring_2 481 521 IPR001841 -
Bisa09g1295 537 MobiDBLite consensus disorder prediction 277 294 - -
Bisa09g1295 537 FunFam E3 ubiquitin-protein ligase arkadia 443 527 - -
Bisa09g1295 537 Pfam Ring finger domain 480 522 IPR001841 -
Bisa09g1295 537 MobiDBLite consensus disorder prediction 226 294 - -
Bisa09g1295 537 SUPERFAMILY RING/U-box 475 525 - -
Bisa09g1295 537 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 526 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1295 Bisa-ChrBisa09 18677163 18679671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1295 378 525 C3H Transcription Factor Family AT2G15530 42.568 3.60e-34 135