Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1286 ATGTCGGGATTGACCTGCAACGCTTGCAACAAGGAATTCAAGGACGATGCAGACCAAAAGCTTCATTATAAGTCTGAGTGGCATCGATATAACCTGAAGCGCAAGGTGGCTGGGGTCCCTGGGGTGACGGAAGCATTATTCCTTGCAAGACAATCTGCAGCTCAAGAGAAAGATAAATCAAGTGAAGCCCCCATGCTTTATAGCTGTGGTCTTTGTGGCAAAGGATATAAAAGTACCAAAGCCCATGCTGAGCATCTCAAGTCCCGTGGCCATTTGATGCGAGCCTCCCAAGCAAGTAGTCAATCGGATGACAAGGCAATAATCAAGCCACTTCCACAATGTGTTGTGAATAGACCTCCTCCCAGAAGAGAGTCAGACAATGATGAGAGTGAAGGAAGTGCAGATGAATGGGAAGAGGTTGATCCTGAAGATGATTTGGTTAATGATGCTGCAACATCATTGACTGATTTGAAGGTAAATGAGCATGACGACAATGTTGATATGGATGAAGATGAAGAGGACTATGAGGATTTGGACCCATCATGTTGTATTATGTGCGATAAAAAACATGATACTATGGAAAGTTGCATTGTCCACATGCACAAGCAACATGGGTTCTTCATTCCAGATGTTGAGTATTTAAAGGATCCAAAAGGCTTGCTTACGTATCTAGGTCTTAAGGTAAAGAGGGACTATATGTGTCTCTACTGCAATGATAGATGTCATCCTTTCAGTAGCTTGGAAGCAGTTAGGAAACACATGACAGCAAAAGGTCATTGTAAAGTACATTATGGTGATGGCGATGGTGATGAGGAAGTAGAATTGGAAGAATTCTACGATTATAGCAGCAGTTATGTGGATGAGCAAGGCAAACAGCTAATTGCATCAGGTGATACAGCCAACAATATAGAACTTGGCAATGGTGGGTCTGAGCTGATAATCACCAAGAAATCTGACAACGGAATATTATCCAAAACACTTGGTTCGCGTGAATTTTTGCGTTATTATCGTCAAAAACCTCGCCCATCATCCACAAATAATGTGGCTATTACTGCTGCATTGGCATCAAGGTACAGGAGCATGGGTTTGGCTACTGTCCAGTCAAGAGAGCAAATGGTAAGGATGAAAGTACTGAAGGAAATGAATAGGTCTGGTGTTGAGACAATGCGTACTAAAATTGGGATGAAAAGTAATGTCATCCGAAATCTGCCAAAGAATGTCCCGTATTAG 1230 0.4244 MSGLTCNACNKEFKDDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSAAQEKDKSSEAPMLYSCGLCGKGYKSTKAHAEHLKSRGHLMRASQASSQSDDKAIIKPLPQCVVNRPPPRRESDNDESEGSADEWEEVDPEDDLVNDAATSLTDLKVNEHDDNVDMDEDEEDYEDLDPSCCIMCDKKHDTMESCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCHPFSSLEAVRKHMTAKGHCKVHYGDGDGDEEVELEEFYDYSSSYVDEQGKQLIASGDTANNIELGNGGSELIITKKSDNGILSKTLGSREFLRYYRQKPRPSSTNNVAITAALASRYRSMGLATVQSREQMVRMKVLKEMNRSGVETMRTKIGMKSNVIRNLPKNVPY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1286 409 Pfam C2H2 type zinc-finger (2 copies) 183 284 IPR041661 -
Bisa09g1286 409 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Bisa09g1286 409 MobiDBLite consensus disorder prediction 87 145 - -
Bisa09g1286 409 Pfam Zinc-finger double-stranded RNA-binding 5 29 IPR022755 -
Bisa09g1286 409 MobiDBLite consensus disorder prediction 130 145 - -
Bisa09g1286 409 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Bisa09g1286 409 SUPERFAMILY beta-beta-alpha zinc fingers 169 229 IPR036236 -
Bisa09g1286 409 SMART ZnF_U1_5 64 98 IPR003604 GO:0003676|GO:0008270
Bisa09g1286 409 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Bisa09g1286 409 PANTHER ZINC FINGER PROTEIN 622 1 408 IPR040025 -
Bisa09g1286 409 SUPERFAMILY beta-beta-alpha zinc fingers 66 99 IPR036236 -
Bisa09g1286 409 SMART c2h2final6 67 91 IPR013087 -
Bisa09g1286 409 SMART c2h2final6 181 204 IPR013087 -
Bisa09g1286 409 SMART c2h2final6 4 28 IPR013087 -
Bisa09g1286 409 SMART c2h2final6 232 259 IPR013087 -
Bisa09g1286 409 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1286 Bisa-ChrBisa09 18562550 18564656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1286 1 409 C2H2 Transcription Factor Family AT4G31420 66.346 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa09g1286 zf-C2H2_2 4.1e-26 CL0361