Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1237 ATGGGAGAGTTGACGAATAAAAATGGATTGATTCCTAACACGGTTTTCCCGAATGCAAAGGTTTCCAAAAACCAGAGTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGTTCCTGCCAATAGTTCTGGAACGGCAAATACAGCAGGTCCATCTAACCAGTTGGCTGATATGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAACGTTGAGTCTTTTTTATCAGATGACCCTAGCGATGCTGTTGGTCCTTGTATGGATGAAAGCAAAGGCTTCACATTTGCTGAAGTAAATTCTGTACGAGCAAGCACAGGCAAAGTTATCTGTTGCCACTTCTCATCTGATGGAAAATTGCTTGCAAGCGGTGGCCGTGACAAAAAGGCTGTTTTATGGTACACGGATTCTTTAAAGCAAAAAACCAATCTTGAAGAACATTCATCTTTGATCTCTGATGTCCGTTTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAGTCCTGGATATTCGCTTTGCACCTTTACAGGACACTCTGCATCTGTTGTGTCACTAGATTTTCACCCAAATAAAGATGATCTGATCTGCTCTTGTGATGGTGATGGTGAGATACGATACTGGAGTATAACCAGTGGAAGCTGTGCTAGAGTGTCAAAGGGGGGCAGTGCCCAGATGAGATTTCAACCTTGTATGGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTGGAGACACAAGCATGTCGATGTTCATTACAGGGACACACAAAGCCAATACATTCAGTGTGCTGGGACACAACAGGGGAGTTACTGGCATCTGTCAGTGAGGAGTCGGTGAGGATTTGGACTCTTGGATCAGGGAGTGAAGGAGATTGTATTCATGAGCTAAGCTGTGGCGGTACTAAATTTCACTCCTGTGTTTTCCATCCAACCTACCCTTTGCTAATCATTGGCTGTTACCAGTCTTTAGAGCTCTGGAATATGACGGAGAACAAGACGATGACTCTGTCTGCTCATGAAGGACTCATTGCTGCCTTGGCAATGTCAACTGTAAATGGTGTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAACTCTGGAAATGA 1155 0.4459 MGELTNKNGLIPNTVFPNAKVSKNQSGRKRKQPVSSSVPANSSGTANTAGPSNQLADMDRFVEDGSLDDNVESFLSDDPSDAVGPCMDESKGFTFAEVNSVRASTGKVICCHFSSDGKLLASGGRDKKAVLWYTDSLKQKTNLEEHSSLISDVRFSPSMPRLATSSFDKTVRVWDVDSPGYSLCTFTGHSASVVSLDFHPNKDDLICSCDGDGEIRYWSITSGSCARVSKGGSAQMRFQPCMGRYLAAAAENVVSILDVETQACRCSLQGHTKPIHSVCWDTTGELLASVSEESVRIWTLGSGSEGDCIHELSCGGTKFHSCVFHPTYPLLIIGCYQSLELWNMTENKTMTLSAHEGLIAALAMSTVNGVVASASHDKFVKLWK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1237 384 PRINTS G protein beta WD-40 repeat signature 371 384 IPR020472 -
Bisa09g1237 384 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Bisa09g1237 384 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Bisa09g1237 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 300 IPR001680 GO:0005515
Bisa09g1237 384 Pfam WD domain, G-beta repeat 347 384 IPR001680 GO:0005515
Bisa09g1237 384 Pfam WD domain, G-beta repeat 183 219 IPR001680 GO:0005515
Bisa09g1237 384 Pfam WD domain, G-beta repeat 108 132 IPR001680 GO:0005515
Bisa09g1237 384 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Bisa09g1237 384 Pfam WD domain, G-beta repeat 142 175 IPR001680 GO:0005515
Bisa09g1237 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 132 IPR001680 GO:0005515
Bisa09g1237 384 Gene3D - 230 384 IPR015943 GO:0005515
Bisa09g1237 384 MobiDBLite consensus disorder prediction 1 54 - -
Bisa09g1237 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 384 IPR001680 GO:0005515
Bisa09g1237 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 224 - -
Bisa09g1237 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 228 IPR001680 GO:0005515
Bisa09g1237 384 Gene3D - 4 229 IPR015943 GO:0005515
Bisa09g1237 384 ProSitePatterns Trp-Asp (WD) repeats signature. 162 176 IPR019775 -
Bisa09g1237 384 SMART WD40_4 179 219 IPR001680 GO:0005515
Bisa09g1237 384 SMART WD40_4 136 175 IPR001680 GO:0005515
Bisa09g1237 384 SMART WD40_4 305 343 IPR001680 GO:0005515
Bisa09g1237 384 SMART WD40_4 345 384 IPR001680 GO:0005515
Bisa09g1237 384 SMART WD40_4 261 299 IPR001680 GO:0005515
Bisa09g1237 384 SMART WD40_4 94 133 IPR001680 GO:0005515
Bisa09g1237 384 FunFam Transcriptional corepressor LEUNIG 229 384 - -
Bisa09g1237 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 384 - -
Bisa09g1237 384 CDD WD40 97 384 - -
Bisa09g1237 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 178 IPR001680 GO:0005515
Bisa09g1237 384 SUPERFAMILY WD40 repeat-like 95 384 IPR036322 GO:0005515
Bisa09g1237 384 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 22 384 IPR044716 GO:0003714
Bisa09g1237 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1237 Bisa-ChrBisa09 17861619 17872168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1237 119 300 U-box Gene Family AT2G33340 31.746 5.58e-18 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1237 09 17861619 17872168 Bisa09g1237 09 17861619 17872168 ECH