Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1236 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATACATGATTACCTAGTAAAGAGGGATTTGAAGGCCTCTGCCCAGGCTTTTCAAGCTGAAGGAAAAGTTTCCTCGGATCCCGTTGCCATTGATGCCCCAGGAGGATTTCTGTTCGAGTGGTGGTCAGTTTTCTGGGATATATTTATTGCCAGGACTAATGAGAAGCATTCTGAAGTTGCTGCATCTTATATTGAGACACAGTTAATTAAGGCAAGGGAACAACAGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCCACAACCCCAGCAGTCACAGCATCAGCAACAACAACAGCAGCAACAACAGCAGCACTTGCAGATGCAACAACTCCTGTTACAGAGGCATGCACAACAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCCTCCTCAACCACAACCACCGCAGCAGCAGCAACCTCCGCAACAACAGCAGAGAAGGGATGGGGCTCATTTGTTGAATGGCAGTACAAATGGGTTAGTTGGGAATCCTAGCACTGCAAATGCCATGGCAACAAAAATGTATGAAGAAAGGTTAAAACTGCCCCTTCAGAGAGATCCTTTGGATGACGCAGCCATGAAGCCAAGATTTGGTGAAAGCATGGGCCAACTTTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTTCTGGCCAGCCGTCGGGACAAGTTTTACATGGTGCTGCTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTAAATCCAAGAGCTGCAGGTCCTGAAGGATCATTAATAGGAATTCCTGGATCGAATCAAGGAAGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGATTTTGACCAACTACGCCCTGGTATTCTTCATCAACAAAAGCCTTTTATACAGGCTCCCCAGCCCTTTCATCAAATTCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAAAATATGGCATCACCACCTACCAGCGATGAAAGTAGAAGACTCAGAATGTTACTGAATAGTAGGACTATGGGCCTAAATAAGGACAGTCTTTCAAATTCTGTTGGTGAAGTGGTATCAAATGTTGGATCGCCTCTTCAAGCTGGTGGTCCTCTTTTGCCTCGTGGGGATGCAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACAGCAGCAACATCAACAGCAGCAGAGCACCAATCCACAACAGCAGCAAATTTCACAGCATGTTCTTTCAAATCAGCAACCTCAGACTCCAAACAATAGCATGCATCAGCTAGATAAATTAGGTGGTGGTGGCAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTTCTGGAACAGCAAATACAGCAGGTCCATCTCCAAGTTCGGCACCATCTACACCCTCAACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTGCCTCAAAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTACTGGAACTCTTACATCGCCATCTAACCAGTTGGCTGATATGGATCGTTTTGTGGAGGATGGATCTCTTGATGATAACGTTGAGTCTTTTTTATCACATGACGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCTTCACATTTGCTGAAGTAAATTCTATACGAGCAAGCACAAGCAAAGTTATCTGTTGCCACTTCTCATCTGATGGAAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTACACGGATTCTTTAAAGCAAAAAACCACTCTTGAAGAACATACCTCTTTGATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAGTCCTGGATATACGCTTCGCACCTTTACAGGACACTCTGCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTGATCTGCTCTTGTGATGGTGATGGTGAGATACGATACTGGAGTATAACCAATGGAAGCTGTGCTAGAGTCTCAAAGGGGGGCACTGCTCAGATGAGATTTCAACCTCGTATGGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTGGAGACACAAGCATGTCGTTGTTCATTACAGGGACACACAAAGCCAATACATTCAGTGTGCTGGGACACAACAGGGGAATTACTGGCATCTGTCAGTGAGGACTCGGTGAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGAGATTGTGTTCATGAGCTAAGCTGTAACGGCAATAAGTTTCACTCCTGTGTTTTCCATCCAACCTACCCTTCTTTGCTGGTCATTGGCTGCTACCAGTCTTTAGAGCTCTGGAATATGACGGAGAACAAGACGATGACTCTGTCTGCTCATGAAGGACTCATTGCTGCCTTGGCAATGTCAACTGTAAATGGTGTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAACTCTGGAAATGA 2712 0.4524 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQPQPQQSQHQQQQQQQQQQHLQMQQLLLQRHAQQQQQQQQQQQQQQQQQQQQQPPQPQPPQQQQPPQQQQRRDGAHLLNGSTNGLVGNPSTANAMATKMYEERLKLPLQRDPLDDAAMKPRFGESMGQLLDPNHASILKSAAASGQPSGQVLHGAAGGMSQQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLTDFDQLRPGILHQQKPFIQAPQPFHQIQMLTPQHQQQLMLAQQNMASPPTSDESRRLRMLLNSRTMGLNKDSLSNSVGEVVSNVGSPLQAGGPLLPRGDADMLMKLKLAQLQQQHQQQQSTNPQQQQISQHVLSNQQPQTPNNSMHQLDKLGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPQSGSSSKPLMMFGTDGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFAEVNSIRASTSKVICCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHTSLITDVRFSPSMPRLATSSFDKTVRVWDVDSPGYTLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSITNGSCARVSKGGTAQMRFQPRMGRYLAAAAENVVSILDVETQACRCSLQGHTKPIHSVCWDTTGELLASVSEDSVRVWTLGSGSEGDCVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMTENKTMTLSAHEGLIAALAMSTVNGVVASASHDKFVKLWK 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1236 903 CDD WD40 615 903 - -
Bisa09g1236 903 SUPERFAMILY WD40 repeat-like 613 903 IPR036322 GO:0005515
Bisa09g1236 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 871 903 - -
Bisa09g1236 903 MobiDBLite consensus disorder prediction 474 534 - -
Bisa09g1236 903 ProSitePatterns Trp-Asp (WD) repeats signature. 680 694 IPR019775 -
Bisa09g1236 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 696 IPR001680 GO:0005515
Bisa09g1236 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 704 742 - -
Bisa09g1236 903 MobiDBLite consensus disorder prediction 427 465 - -
Bisa09g1236 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 818 IPR001680 GO:0005515
Bisa09g1236 903 MobiDBLite consensus disorder prediction 165 191 - -
Bisa09g1236 903 Gene3D - 595 751 IPR015943 GO:0005515
Bisa09g1236 903 Pfam LisH 10 36 IPR006594 GO:0005515
Bisa09g1236 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 619 660 IPR001680 GO:0005515
Bisa09g1236 903 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 903 - -
Bisa09g1236 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 704 746 IPR001680 GO:0005515
Bisa09g1236 903 SMART Lish 8 40 IPR006594 GO:0005515
Bisa09g1236 903 FunFam Transcriptional corepressor LEUNIG 747 903 - -
Bisa09g1236 903 MobiDBLite consensus disorder prediction 145 191 - -
Bisa09g1236 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 871 903 IPR001680 GO:0005515
Bisa09g1236 903 SMART WD40_4 823 862 IPR001680 GO:0005515
Bisa09g1236 903 SMART WD40_4 864 903 IPR001680 GO:0005515
Bisa09g1236 903 SMART WD40_4 612 651 IPR001680 GO:0005515
Bisa09g1236 903 SMART WD40_4 697 737 IPR001680 GO:0005515
Bisa09g1236 903 SMART WD40_4 654 693 IPR001680 GO:0005515
Bisa09g1236 903 SMART WD40_4 779 817 IPR001680 GO:0005515
Bisa09g1236 903 Pfam WD domain, G-beta repeat 866 903 IPR001680 GO:0005515
Bisa09g1236 903 Pfam WD domain, G-beta repeat 658 693 IPR001680 GO:0005515
Bisa09g1236 903 Pfam WD domain, G-beta repeat 700 737 IPR001680 GO:0005515
Bisa09g1236 903 Pfam WD domain, G-beta repeat 621 650 IPR001680 GO:0005515
Bisa09g1236 903 Pfam WD domain, G-beta repeat 782 816 IPR001680 GO:0005515
Bisa09g1236 903 Gene3D - 752 903 IPR015943 GO:0005515
Bisa09g1236 903 Coils Coil 123 153 - -
Bisa09g1236 903 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Bisa09g1236 903 MobiDBLite consensus disorder prediction 427 553 - -
Bisa09g1236 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 696 - -
Bisa09g1236 903 MobiDBLite consensus disorder prediction 94 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1236 Bisa-ChrBisa09 17827903 17837710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1236 637 818 U-box Gene Family AT2G33340 32.812 9.29e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bisa09g1236 WD40 0.28 CL0186