Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1204 ATGTTTTCTGGGCAACAGCATGATTTGGGATTCATCAAATTATATCACTGGAAGTCCAAAGCTGTTTTCCCTGAGCAAAATATGGGAGAAACAAAGGACGAAGGATACGAGGAAGAGCTTCTTGACTACGAGGAGGAAGAGGACAAAGCCCCTGATTCCGTGGGAACCAAAGTTAATGGTGAAGCTGCTAAGAAGGGCTACGTTGGGATCCACAGTTCGGGGTTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTTCGTGCCATTGTGGACTCAGGATTTGAGCATCCTTCTGAAGTACAACACGAGTGCATTCCTCAAGCAATCCTTGGAATGGATGTGCTTTGTCAAGCCAAGTCTGGAATGGGAAAGACTGCTGTCTTTGTTCTTTCAACTTTGCAGCAGATTGATCCCGTTGCCGGCCAAGTTGCTGCACTTGTTCTGTGTCATACAAGGGAATTAGCATATCAGATATGCCATGAGTTCGAAAGGTTCAGTACCTATTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAGTCCACAAGGATCTGCTGAAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTTGCATTGGCTCGGGATAAGGACCTTTCCTTAAAGAATGTCAGACATTTTATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGAAGAGACGTGCAAGAGATTTTCAAGATGACTCCTCACGATAAGCAAGTCATGATGTTTTCGGCAACTCTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTCGATGACGAAGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAGAACCGGAAGTTAAATGATCTTCTTGATGCACTAGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCTTCTATATGCATCCACTCTGGCATGTCTCAGGAGGAAAGGTTAAAGCGCTATAAAGGTTTTAAGGAGGGGCATACAAGGATTCTCGTCGCAACAGATTTGGTTGGTAGGGGAATAGACATTGAACGTGTTAACATTGTTATAAACTATGACATGCCTGATTCTGCTGACACCTACTTGCACAGGGTTGGCAGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGCGCTGCTGATGTTGATGTTCTCAACAATGTCCAGTCAAGGTTTGAAGTTGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCAACCTACATGCCATCATAG 1365 0.4337 MFSGQQHDLGFIKLYHWKSKAVFPEQNMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1204 454 CDD SF2_C_DEAD 290 419 - -
Bisa09g1204 454 Gene3D - 286 453 IPR027417 -
Bisa09g1204 454 Pfam Helicase conserved C-terminal domain 303 410 IPR001650 -
Bisa09g1204 454 CDD DEADc_DDX39 72 279 - -
Bisa09g1204 454 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 73 101 IPR014014 GO:0003724
Bisa09g1204 454 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 289 450 IPR001650 -
Bisa09g1204 454 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 277 IPR014001 -
Bisa09g1204 454 Pfam DEAD/DEAH box helicase 98 263 IPR011545 GO:0003676|GO:0005524
Bisa09g1204 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 421 IPR027417 -
Bisa09g1204 454 Gene3D - 69 285 IPR027417 -
Bisa09g1204 454 SMART ultradead3 92 293 IPR014001 -
Bisa09g1204 454 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 71 428 - -
Bisa09g1204 454 FunFam DEAD-box ATP-dependent RNA helicase 286 454 - -
Bisa09g1204 454 FunFam DEAD-box ATP-dependent RNA helicase 56-like 61 279 - -
Bisa09g1204 454 SMART helicmild6 329 410 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1204 Bisa-ChrBisa09 17348658 17359451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1204 28 454 Eukaryotic Initiation Factors Gene Family AT5G11200 83.369 0.0 758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1204 09 17348658 17359451 Bisa09g1204 09 17348658 17359451 ECH