LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g1200	ATGATACAGTCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTTTACTAAAGAGAAGGGTGTGGCTGGGGACGTTTGAGACAGCAGAGGCAGCAGCGAGGGCGTACGACCAAGCGGCCATTTTGATGAACGGAAGAAATGCCAAGACTAATTTCCCGCCAGTGGGCAGTGAGGGTTGTGATCAGAAGGAAGAAGGTGAAGATGGTAATAATGGCGGGTCTTTCTTGTCTCCCAAGGCACTCTCAGAAATGTTAACCACAAAGCTCAAGAAATGCTGCAAGGACCCTTCTCCTTCCCTCATCTGTCTGAGGCTTGACTCTGATAATTCCCACATTGGGGTGTGGCAGAAGACTCCTGGCCCTCGCTCTCACTCCAACTGGGTCATCAGGGTCCAGCTTGGCAACAACAAACAACCTCGTCATCATCAACATCATCATGATAAAATCAGTTTAACAGCAGAAGAACAACACATTACTACTGGTGATATTGGTGAAGCTGCGAGTCATGGGGTGGTGCAGGATGAAGAGGACACAGTGGCAATGCAAATGATTGAAGAGCTTCTGAATTGGAACTATCCTTGTGCTTCTTCAAGTAATCATCATCCTCAGGAAGATAAACTAAGAGGGAATAACCTTCTTCCATCTCACGCTTCTTTAATTAATTAG	696	0.4713	MIQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPPVGSEGCDQKEEGEDGNNGGSFLSPKALSEMLTTKLKKCCKDPSPSLICLRLDSDNSHIGVWQKTPGPRSHSNWVIRVQLGNNKQPRHHQHHHDKISLTAEEQHITTGDIGEAASHGVVQDEEDTVAMQMIEELLNWNYPCASSSNHHPQEDKLRGNNLLPSHASLIN	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g1200	231	CDD	AP2	5	65	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1200	231	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	4	160	-	-
	Bisa09g1200	231	MobiDBLite	consensus disorder prediction	207	231	-	-
	Bisa09g1200	231	Pfam	AP2 domain	6	55	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1200	231	PRINTS	Ethylene responsive element binding protein signature	7	18	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1200	231	PRINTS	Ethylene responsive element binding protein signature	29	45	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1200	231	SUPERFAMILY	DNA-binding domain	6	63	IPR016177	GO:0003677
	Bisa09g1200	231	ProSiteProfiles	AP2/ERF domain profile.	6	63	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1200	231	Gene3D	AP2/ERF domain	5	64	IPR036955	GO:0003700\|GO:0006355
	Bisa09g1200	231	SMART	rav1_2	6	69	IPR001471	GO:0003700\|GO:0006355
	Bisa09g1200	231	MobiDBLite	consensus disorder prediction	62	87	-	-
	Bisa09g1200	231	FunFam	Ethylene-responsive transcription factor 2	5	64	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g1200	Bisa-ChrBisa09	17284140	17284956	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g1200	1	207	AP2-EREBP Transcription Factor Family	AT5G25390	54.106	3.23e-72	216

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa09g1200		AP2	2.5e-12	CL0081