Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1197 ATGATACAGTCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTTTACTAAAGAGAAGGGTGTGGCTGGGGACGTTTGAGACAGCAGAGGCAGCAGCGAGGGCGTACGACCAAGCGGCCATTTTGATGAACGGAAGAAATGCCAAGACTAATTTCCCGCCAGTGGGCAGTGAGGGTAGTGATCAGAAGGAAGAAGGTGAAGATGGAAATAATGACGGGTCTTTCTTGTCTCCCAAGGCACTCTCAGAAATGTTAACCACAAAGCTCAAGAAATGCTGCAAGGACCCTTCTCCTTCCCTCGTCTGTCTGAGGCTTGACTCTGATAATTCCCACATTGGGGTGTGGCAGAAGACTCCTGGCCCTCGCTCTCACTCCAACTGGGTCATCAGGGTCCAGCTTGGCAACAACAAACAACCTCGTCATCATCAACATCATCATGATAAAACCAGTTTAACAGCAGAAGAACAACACATTACTACTGGTGATATTGGTGAAGCTGCGAGCCATGGGGTGGTGCAGGATGAAGAGGACACAGTGGCAATGCAAATGATTGAAGAGCTTCTGAATTGGAACTATCCTTGTGCTTCTTCAAGTAATCATTATCCTCAGGAAGATAAATTAAAAGGGAATAACCTTCTTCCATCTCACACTTCTTTAATTAATTAG 696 0.4684 MIQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPPVGSEGSDQKEEGEDGNNDGSFLSPKALSEMLTTKLKKCCKDPSPSLVCLRLDSDNSHIGVWQKTPGPRSHSNWVIRVQLGNNKQPRHHQHHHDKTSLTAEEQHITTGDIGEAASHGVVQDEEDTVAMQMIEELLNWNYPCASSSNHYPQEDKLKGNNLLPSHTSLIN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1197 231 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Bisa09g1197 231 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bisa09g1197 231 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bisa09g1197 231 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bisa09g1197 231 MobiDBLite consensus disorder prediction 57 87 - -
Bisa09g1197 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 158 - -
Bisa09g1197 231 SUPERFAMILY DNA-binding domain 6 63 IPR016177 GO:0003677
Bisa09g1197 231 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bisa09g1197 231 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Bisa09g1197 231 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bisa09g1197 231 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1197 Bisa-ChrBisa09 17218137 17218945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1197 1 207 AP2-EREBP Transcription Factor Family AT5G25390 54.589 2.04e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa09g1197 AP2 2.5e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1197 09 17218137 17218945 Bisa09g1197 09 17218137 17218945 ECH
Bisa02g0476 02 8154094 8155571 Bisa09g1197 09 17218137 17218945 ECH