Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1157 ATGGCGTTCCATAATCCCCAACACCATTTCTCTCACTCCTTCCTTTCCGATCAACCCTCGAATTTGCTCGAACACGCCCTTCTCAATACCCACTACGACGACAATAACGGCAACGCCAACAATTTCCTCAACCTCCACACTGCTCCCTCTGACTCCGCCGCAGACCGCCCGGTTCTCCGCGGTGACCGCAGTGACGTCATCGACGGTCCTTCTACCTTGTCCCAGGAATCCGCCGATTTGAAGACGGCCGGCGACGGCAACTTCAACGCGAAGAGCGAGGTGGTTGCGGAGGAGGACGGCGGGGAAAATGGTAGGTCGAAGGCGGAGATTCTAGCCCATCCGCTGTACGAGCAGCTGCTGTCGGCCCACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCGAGGATCGACGCTCAGCTAGCGCAGTCCCAGAATGTGGTCGCCAAGTACTCCGCTTTCGGGCATGGAGCTCAGAGCATGGTTGGGGATGATAAGGGACTCGATCAGTTCATGTCGCACTATGTTCTGTTACTCTGTTCTTTCAAAGAACAACTCCAACAACATGTCCGAGTCCACGCAATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCAGGAGAAGGTACAGGGGCTACAATGTCTGATGACGAAGATGACCAAGTAAATAGTGATGCCTATGTGTTTGATGGCTCAGACAGCATGGGGTTTGGCCCTCTTATTCCAACAGAGAATGAGAGGTCTCTCATGGAACGTGTTAGGCAAGAGTTAAGGCATGAATTGAAGCAGGGTTATAAGGAGAAAATTGTGGACGTGAGAGAGGAAATTTTGCGCAAGAGACGAGCCGGGAAGCTTCCCGGAGACACCACATCTGTCCTGAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACTGAGGAAGATAAGGCAAAGTTGGTACAGGAAACTGGTTTACAATTGAAGCAGATTAACAATTGGTTCATCAATCAAAGGAAGAGGAACTGGCACAGCAATGCTTCAACTTCTACGGTCTCCAAGAGCAAGCGGAAAAGGTGA 1098 0.5182 MAFHNPQHHFSHSFLSDQPSNLLEHALLNTHYDDNNGNANNFLNLHTAPSDSAADRPVLRGDRSDVIDGPSTLSQESADLKTAGDGNFNAKSEVVAEEDGGENGRSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQSMVGDDKGLDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVNSDAYVFDGSDSMGFGPLIPTENERSLMERVRQELRHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNASTSTVSKSKRKR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1157 365 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677|GO:0006355
Bisa09g1157 365 ProSiteProfiles ELK domain profile. 268 288 IPR005539 GO:0003677
Bisa09g1157 365 SMART HOX_1 290 355 IPR001356 GO:0003677
Bisa09g1157 365 FunFam homeobox protein knotted-1-like 3 isoform X1 289 350 - -
Bisa09g1157 365 Pfam ELK domain 268 289 IPR005539 GO:0003677
Bisa09g1157 365 MobiDBLite consensus disorder prediction 44 86 - -
Bisa09g1157 365 CDD homeodomain 291 352 IPR001356 GO:0003677
Bisa09g1157 365 SMART KNOX1_2 104 148 IPR005540 GO:0003677|GO:0005634
Bisa09g1157 365 SMART ELK_2 268 289 IPR005539 GO:0003677
Bisa09g1157 365 SMART KNOX2_2 160 215 IPR005541 GO:0003677|GO:0005634
Bisa09g1157 365 Pfam KNOX1 domain 107 147 IPR005540 GO:0003677|GO:0005634
Bisa09g1157 365 Pfam KNOX2 domain 164 214 IPR005541 GO:0003677|GO:0005634
Bisa09g1157 365 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 351 - -
Bisa09g1157 365 Gene3D - 287 363 - -
Bisa09g1157 365 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677
Bisa09g1157 365 SUPERFAMILY Homeodomain-like 290 353 IPR009057 -
Bisa09g1157 365 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1157 Bisa-ChrBisa09 16817929 16819926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1157 14 365 Homeobox Transcription Factor Family AT5G25220 69.588 6.11e-179 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa09g1157 KNOX2 2.1e-20 No_clan