Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1141 ATGGGTTTGGGACATTTCTCAAAAATCACCAGTGCGAGTTACTCTACATCTCATTGGTTTTTCTATCTTGAAGCAACACTTGGAGACTTAAATCTGGGTGATGGAGGACTACAAGATATTTCATCTAACATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCCATTTATAATATAGACGAGTCAGATGATGAAGCTGATATTTTGCCTGGAAAACATGGGCCAACTCAGGAAAATTTTGAGAGGATAGTTAGAGACGATGCAAAAGAAAATTGTTGTCAAGCTTGTGGAGAAAGTGGGAATCTTATGACCTGTGAAACATGCACTTATTCCTATCATCCTAGGTGTTTACTTCCACCACTCAAAGCTCCGCTTCCAGAAAAATGGAGGTGCCCTGAATGTGTTAGTCCACTCAATGATATTGATAAGATATTAGACTGCGAGATGCGCCCTACAGTAGCTGGTGACAATGATGCCTCAGAAGTGGGATCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATATCTTCACTGCACATGGGTGCCGGAAAAGGAGTTTTTGAGAGCTTTCAAGACACATCCTCGCCTAAAGACCAAAGTAAACAACTTCCATCGTCAAATGGCATCAGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGATCTGAATGGACTACGGTTGATCGGATACTTGCTTGCAGGGGTGATGATGATGAAAAGGAATATCTTGTGAAGTGGAGAGAGCTCTCATATGATGAATGCTATTGGGAATCTGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAACAGATTTCAGTCTAGGTCTAGGAAGCTTGACTCTAGCAAGCAGAAAAGCAGCTTTAAGGATGGTGCTGAATCAAAGAAGCATCAGAAAGAATTTCAACAGTATGAACATAGCCCTGAATTTCTTTCAGGCGGTACACTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGTTTCTCTTGGTCTAAGCAAACACATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACTATACAAAGTATTGCTTTTTTAGCATCGCTTTTTGGAGAGAATGTTTCTCCACATTTGGTGGTTGCTCCACTTTCAACTCTGCGTAACTGGGAACGTGAATTTGCAACATGGGCACCGCAAATGAATGTCGTTATGTATGTTGGATCTTCCCAAGCTCGTGCTGTTATAAGAGAGTACGAATTTTATTTTCCAAAGAGCCAGAAGAAGATAAAAAAAAAGAAATCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTACTGTTGACATCATATGAGATGATCAACCTTGACACAGCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTTAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTTTTGACTGGGACCCCTCTTCAGAACAACCTGGATGAACTTTTTATGCTTATGCACTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAAGAGTTTCAGGAAGAGTTCAAGGATATCAATCAAGAAGAGCAGATTTCAAGGCTTCACCAAATGTTGGCCCCGCATCTTCTTAGAAGGGTCAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAACTATCAGATATTAACTCGTCGTGGTGGTGCGCAGATTTCTCTTATCAATGTTGTTATGGAGTTGCGAAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTCAAGATGCAAAAGAGTCTTACAAACAGCTGCTGGAATCATCGGGGAAATTGCAATTGTTAGACAAAATGATGGTGAAGCTAAAAGAGCAAGGGCATAGAGTCCTCATATATTCCCAATTTCAGCATATGCTGGACTTGCTAGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAAGGATAGATGGGAAGGTTGGTGGAGCTGAAAGACAAGTACGGATAGATCGGTTTAATGCCAAAAATTCCTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCCAGAGCTCATCGACTTGGACAAACTAATAAGGTGATGATTTATAGGCTAGTAACACGAGGAAGCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATCTAGTTGTAGGAAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGATATCATAAGGTATGGCTCCAAGGAGTTATTTGCTGATGAGAATGATGAAGTGGGCAAATCACGGCAAATTCATTATGATGATGCTGCCATAGATAGATTGCTGGATCGGGAACAAGTTGGTGATGAAGAGGCCTCAATGGATGAAGAAGAAGATGGATTTTTGAAGGCCTTTAAGGTGGCGAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCAAAGGAGGCAGCAAGAAAGAAAGCCATGGAGATGGAATCTACTGTGGCAAGTACAGAAAGAACAAAATATTGGGAGGAGTTGCTAGGAGACAGATATGAAGTGCACAAAGTTGAAGAGTTGAATGCGTTGGGCAAAGGGAAGCGGAGTCGTCACAAGCAGATGGTTTCTGTTGAGGAGGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGATGACAATTATGAAACAGAGCTTACTGATGGTGATTCAAATTCAACTGGAACTGTGTCTAGAAGGCCTTACAAAAAGAGAGCCCGTGCAGATAGCACAGAGCCACTTCCCCTGATGGAAGGTGAAGGAAAGTCATTTCGAGTACTTGGCTTCAATCAGAATCAGAGAGCTGCATTTGTGCAAATACTGATGAGGTTTGGGGTTGGTGATTATGATTGGAAGGAATTTGCTTCCCGCATGAAACAGAAGTCTTACGAAGAAATCAGAGATTATGGAATCCTTTTCCTAACACACATCACAGAAGATATAACTGATTCCCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAATACAAGATGTACTTGTTAGGATTGCAGTTCTGTCCTTGATTGCGGAGAAAGTGAAGTTTGCATCTGAGAATCCTGGGTCTCCACTTTTTTCGGATGAAATCTTATTTCGCTATCCAACTTTGAAGGGCGGAAAGATATGGAAGGAGGAGCATGATTTAGTGTTGCTGCGTGCTGTGTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAGATTCAGGAGGTTATCTGTCAGGAGTTGAACCTTCCCTTTATAAATTTACCATTGCCAGGACAAGTTGGGTCTCAGACACAAAATGGTGTAAATTTGTCAAATGTAGAAGCACCCAGCAATCAATCTAGGGAAAATGGTGGGAGTGACATAGCAGCTGACGGTCCACCTGGTTCTGGTGATGCTAGGAACCAAACACACTTATATCAAGATTCCTCCATATTGCATCATTTTAGAGACATGCAGAGAAGACAGGTTGAATTTATAAAGAAGAGGGTGCTTCTCTTGGAAAAAGGGATCAATGCAGAGTACCAGAAAGAATGCTTGGGTGAGAAAGCAAATGAAGTAACAAACGATGGACTTAAATGTGAACCCAAGGCTACAAATATTCCGCATAAATCAGGGGAGACAGAAACCCGAATGTTTGATCAACTGCCTCAAGTAGAAGCAATAGCTTCAGATGAGATTTCCAATGCTACTTGTGATAGTGATCCAAAACGATTGGAATTGGTTCGGCTTTATAATGAGATGTGCAAAGTCGTGGAGGAAAACACCATAGGATTAGTTCAAACATCATTGGCAAGAGAACCAGCAGAAGTCGATGCTGTGAAGAACTTTCTTTCAATGGATACTATTTGCAAAGACATCAATAGAATTCTAACACCCTCACAGCAAAGTCATCCTATTGAACAAAAGCCATTATTGATTCCAGAGAATAAATCAGAGTCTTCACCAAAAAGTGAAGTCTTGATTTCTCAAGATGGCTGCCAACCTGAATCAGCGACCAATGAGAGAAAAGATGTGGTAATAGAGTCTGAACTTGAAAAAGAAAGCAGCACAGGCCCTGTCAAAGAAAAGGAAACACGTCTTCTAGAAACAAGGGGAAGTGATATAGAAATGGATGAAGCTAAGAATGATGCTGAGCTGAATGAGAAGATGGAGAAATCCGACGCCGCGGTCATTTTATTGGATGATTAA 4440 0.4054 MGLGHFSKITSASYSTSHWFFYLEATLGDLNLGDGGLQDISSNMSSLVERLRVRSDRRPIYNIDESDDEADILPGKHGPTQENFERIVRDDAKENCCQACGESGNLMTCETCTYSYHPRCLLPPLKAPLPEKWRCPECVSPLNDIDKILDCEMRPTVAGDNDASEVGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLRAFKTHPRLKTKVNNFHRQMASVNTSDEDFVAIRSEWTTVDRILACRGDDDEKEYLVKWRELSYDECYWESESDISAFQPEIERFNRFQSRSRKLDSSKQKSSFKDGAESKKHQKEFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREYEFYFPKSQKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHQMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDAKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEVGKSRQIHYDDAAIDRLLDREQVGDEEASMDEEEDGFLKAFKVANFEYIDEVEAAAKEAARKKAMEMESTVASTERTKYWEELLGDRYEVHKVEELNALGKGKRSRHKQMVSVEEDDLAGLEDVSSDGDDNYETELTDGDSNSTGTVSRRPYKKRARADSTEPLPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGVGDYDWKEFASRMKQKSYEEIRDYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLSLIAEKVKFASENPGSPLFSDEILFRYPTLKGGKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPLPGQVGSQTQNGVNLSNVEAPSNQSRENGGSDIAADGPPGSGDARNQTHLYQDSSILHHFRDMQRRQVEFIKKRVLLLEKGINAEYQKECLGEKANEVTNDGLKCEPKATNIPHKSGETETRMFDQLPQVEAIASDEISNATCDSDPKRLELVRLYNEMCKVVEENTIGLVQTSLAREPAEVDAVKNFLSMDTICKDINRILTPSQQSHPIEQKPLLIPENKSESSPKSEVLISQDGCQPESATNERKDVVIESELEKESSTGPVKEKETRLLETRGSDIEMDEAKNDAELNEKMEKSDAAVILLDD 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1141 1479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 142 IPR013083 -
Bisa09g1141 1479 MobiDBLite consensus disorder prediction 1377 1465 - -
Bisa09g1141 1479 Gene3D - 223 284 - -
Bisa09g1141 1479 MobiDBLite consensus disorder prediction 1180 1219 - -
Bisa09g1141 1479 ProSiteProfiles Chromo and chromo shadow domain profile. 235 297 IPR000953 -
Bisa09g1141 1479 SMART ultradead3 325 538 IPR014001 -
Bisa09g1141 1479 SMART helicmild6 681 765 IPR001650 -
Bisa09g1141 1479 ProSiteProfiles Chromo and chromo shadow domain profile. 143 225 IPR000953 -
Bisa09g1141 1479 Pfam Helicase conserved C-terminal domain 652 765 IPR001650 -
Bisa09g1141 1479 MobiDBLite consensus disorder prediction 290 312 - -
Bisa09g1141 1479 Pfam CHD subfamily II, DUF1087 886 948 IPR009463 -
Bisa09g1141 1479 SMART PHD_3 96 139 IPR001965 -
Bisa09g1141 1479 CDD CD2_tandem 233 284 - -
Bisa09g1141 1479 SUPERFAMILY Chromo domain-like 223 287 IPR016197 -
Bisa09g1141 1479 SMART DUF1086_2 956 1113 IPR009462 GO:0003677|GO:0006338
Bisa09g1141 1479 ProSiteProfiles Rubredoxin-like domain profile. 104 148 IPR024934 GO:0005506
Bisa09g1141 1479 SMART DUF1087_2 885 951 IPR009463 -
Bisa09g1141 1479 Gene3D - 143 218 - -
Bisa09g1141 1479 ProSiteProfiles Zinc finger PHD-type profile. 94 141 IPR019787 -
Bisa09g1141 1479 SMART chromo_7 142 205 IPR000953 -
Bisa09g1141 1479 SMART chromo_7 233 287 IPR000953 -
Bisa09g1141 1479 Pfam PHD-finger 97 139 IPR019787 -
Bisa09g1141 1479 MobiDBLite consensus disorder prediction 1180 1202 - -
Bisa09g1141 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 821 IPR027417 -
Bisa09g1141 1479 Gene3D - 572 796 IPR027417 -
Bisa09g1141 1479 Gene3D - 1080 1256 - -
Bisa09g1141 1479 MobiDBLite consensus disorder prediction 1414 1465 - -
Bisa09g1141 1479 CDD SF2_C_SNF 650 776 - -
Bisa09g1141 1479 Pfam SNF2-related domain 349 629 IPR000330 GO:0005524|GO:0140658
Bisa09g1141 1479 MobiDBLite consensus disorder prediction 935 997 - -
Bisa09g1141 1479 Coils Coil 888 908 - -
Bisa09g1141 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 562 IPR027417 -
Bisa09g1141 1479 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 341 527 IPR014001 -
Bisa09g1141 1479 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 655 816 IPR001650 -
Bisa09g1141 1479 ProSitePatterns Zinc finger PHD-type signature. 97 138 IPR019786 -
Bisa09g1141 1479 MobiDBLite consensus disorder prediction 947 967 - -
Bisa09g1141 1479 Gene3D - 321 571 IPR038718 -
Bisa09g1141 1479 MobiDBLite consensus disorder prediction 1391 1413 - -
Bisa09g1141 1479 CDD CD1_tandem 141 215 - -
Bisa09g1141 1479 SUPERFAMILY Chromo domain-like 109 220 IPR016197 -
Bisa09g1141 1479 Pfam Chromo (CHRromatin Organisation MOdifier) domain 236 284 IPR023780 -
Bisa09g1141 1479 Pfam Chromo (CHRromatin Organisation MOdifier) domain 145 196 IPR023780 -
Bisa09g1141 1479 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 100 1416 - -
Bisa09g1141 1479 Pfam CHD subfamily II, SANT-like domain 978 1110 IPR009462 GO:0003677|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1141 Bisa-ChrBisa09 16643508 16666027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1141 351 826 RAD5 or RAD16-like Gene Family AT1G02670 22.662 1.48e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa09g1141 SNF2_N 2.6e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1867 05 35441660 35496052 Bisa09g1141 09 16643508 16666027 CCT