Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1100 ATGGAGAATGATTCTATAGAGGACATGGACATCGAGGTCCTTCCTTCGATGTGGCCTGAAGATATTGGAACCAATGTTAGAAAGCAATTCAACATAGAAAAGCCTGGAAAGGACCAAGATATGTTAGAAGATGTTAGAATAATGGATGAGCCAAGTATAGTTGATTTCAAGCGTCTCATGGAGCTTACAAGTTATACAGACAAAGGGTCATCTCAACTTTCTTACCTTATGAAACATTGGGAGTACAAGCACGCCAATGCAGTGCGTCTTCTTATCCAAGAAATTGACAACCTAAGCAAACAGAGGCGCCAGGCTGAGCTTAGGAAGCTAGAGATATTGGAGGACCATCGATTCGAGGAAGAGATTTATGGCGATAAACGGCCGGTTTCTATCTTGGATGAAATATATGACATATGGCAAGATGTGCCAAGCATGGATAATGATGTTGTTGTTCATAACAAGAAGAGAATTGATATAGATGTTGAATATGATACTGTTGTATACTGGAAACAGCGGGCCTTGCATTTGGAAAAATTGTTGGAAGCAAGTATCCAAAGGGAGCAGGTACTCACAGAAAAGTTGCAAGAAAGTATAAAGAATCTTGAAAGGCAATCCTCACCTGTGGAAGAACTGTCCCAGATTCTGAAAAGGGCAGATAACTTCTTACATTTTGTACTCCAGAATGCACCTGTAGTTATCGGTCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTCCCAAGTTTGGACGAGGAGGACATCATTGGAAAAACAGATGTTGAAATTTTCACAGGATCTGGTGTTAAAGAATCTCAAGATTTTAAAAGAGAAGTTTTGGAAAAGGGATTACCCGCAAAAAGGGAAATTACTTTTGAGACAGAGTTATTTGGGTCAAAGACATTCTTGATCTATGTAGAACCTGTCTTCAGCAAGACAGGGGAGACACTAGGAATAAACTATATGGGAATGGATGTAACAGATCAGGTAAGAAAAAGAGAAAGGATAGTGAAAATTCGAGAAGAGATTGCAGTTCAGAAAGCCAAGGAAACAGAATTGAATAGAACTATTCACATTACAGAGGAGACCATGCGGGCAAAACAAATGTTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAGGACAAAACTTGATCACGAGCAAAGACAGCTCTTGGATGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTCATGAAGTTGGAAGCTACTAAATTCCGGCCGAGAGAGGTAGTAAAGCATGTACTCCAAAATGCTGCAGCTTCATTGCAAAAAATATTAACCTTGGAAGGAAATGTAGCAGATGATGTTCCCATTGAGGTTATTGGAGATGTTTTACGGATTCGGCAAATTCTCACAAATTTAGTCAGCAACGCAATCAAGTTTACTCATAAAGGAAAAGTTGGTATAAACCTTAACGTTGTGTCAGAGCCATCTTTTGCAAGAGAAGAAGATAACCTCCAAAAGACTAGACAAGATCAGTCAAGTATTTCAGGGAATGGTGACCAAAATCATGCAATGAGTAATGAATGCAGATCTCCAGTTAAAAGCGAGTGCCTGATGAATGAAGATATTGAACAACAAACTCATTCAACAAAGACAACAGTGTGGATTCGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGCGATTCCTTCTTTATTTAAAAGGTACATGCAAGTCAGTGCAAATCATGCTCGAAAGTATGGTGGTACAGGGCTAGGATTGGCAATATGCAAACAACTGGTTGAATTAATGGGTGGTCGTCTTACGGTGTCTAGCAAGGAACACTGTGGTTCTACATTTACGTTCATACTGCCATACAAGGTTTCATCTGTTTGTGATCGTTCTGATGATTCTGATGCGATCTCTGATGCGGACGATAACGATGCTGCACCAGATGATACAACTGAGGGTTTCTTCCAATTCCAACCACCCACTTTGGGCTCTCTGTTCTCATCCAAGGGATCTGGACATACAACCTGGCATAAACTCAATGGGTTTTCAGAGAACTCATACTCATTCCCTACTGATAACCTCAAATCGAACAGAACAACTTCACTTAAGGATGCATCATCATCAGTGGTTGATGGCCCTGAGTTATCTGGATCTGTGTGTTCATCGAGTCATAGCCCAAAAACAAAGAACGAAAATTTATTTAGTAGAGACAAATCGCAAAATGGCTCTTCGCATCATGCAGATGCAAGTAGAGATCATCATATAGCCGCTGCATCAAAGTCAAGCAAACCTCAGCAATGTGTCCCTATTAGCGGTACACCAGAAGTAACCAATCCAGCATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATAAATGTCATGGTGACGCAATCAATGATGAAGCAGTTAGGTCATTGCATAGATGTTGTGAATAATGGAGTGGAAGTTGTGCGTGCAGTTCAGCACCAAAGTTATGATCTAATTCTAATGGATGTGTGCATGCCAGTTATGAATGGTTTGCAAGCAACAAAATTGATTCGTTCTTTTGAAGAAACAGGTAACTGGGATGCTGCAAGAGAAGCTGGAATTGAGCAATGTCTGCCAACGTCAAGTTTGAATAAGAATGAAATTTCCATACCTTCCATCAAGAGGATCCCCATTATCGCGATGACGGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCATATGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAGTGTCTTGAACAATACTTACAGTGA 2868 0.4006 MENDSIEDMDIEVLPSMWPEDIGTNVRKQFNIEKPGKDQDMLEDVRIMDEPSIVDFKRLMELTSYTDKGSSQLSYLMKHWEYKHANAVRLLIQEIDNLSKQRRQAELRKLEILEDHRFEEEIYGDKRPVSILDEIYDIWQDVPSMDNDVVVHNKKRIDIDVEYDTVVYWKQRALHLEKLLEASIQREQVLTEKLQESIKNLERQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLDEEDIIGKTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKTGETLGINYMGMDVTDQVRKRERIVKIREEIAVQKAKETELNRTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSRTKLDHEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQNAAASLQKILTLEGNVADDVPIEVIGDVLRIRQILTNLVSNAIKFTHKGKVGINLNVVSEPSFAREEDNLQKTRQDQSSISGNGDQNHAMSNECRSPVKSECLMNEDIEQQTHSTKTTVWIRCDVYDTGIGIPEKAIPSLFKRYMQVSANHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSSVCDRSDDSDAISDADDNDAAPDDTTEGFFQFQPPTLGSLFSSKGSGHTTWHKLNGFSENSYSFPTDNLKSNRTTSLKDASSSVVDGPELSGSVCSSSHSPKTKNENLFSRDKSQNGSSHHADASRDHHIAAASKSSKPQQCVPISGTPEVTNPALKPKILLVEDNKINVMVTQSMMKQLGHCIDVVNNGVEVVRAVQHQSYDLILMDVCMPVMNGLQATKLIRSFEETGNWDAAREAGIEQCLPTSSLNKNEISIPSIKRIPIIAMTANALSESAEECFANGMDSYVSKPVTFQKLKECLEQYLQ 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1100 955 CDD HisKA 366 428 IPR003661 GO:0000155|GO:0007165
Bisa09g1100 955 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 3 954 - -
Bisa09g1100 955 Gene3D PAS domain 201 331 - -
Bisa09g1100 955 MobiDBLite consensus disorder prediction 526 544 - -
Bisa09g1100 955 Pfam Response regulator receiver domain 809 876 IPR001789 GO:0000160
Bisa09g1100 955 Gene3D - 431 652 IPR036890 -
Bisa09g1100 955 MobiDBLite consensus disorder prediction 783 797 - -
Bisa09g1100 955 MobiDBLite consensus disorder prediction 722 799 - -
Bisa09g1100 955 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 421 648 IPR036890 -
Bisa09g1100 955 Coils Coil 184 204 - -
Bisa09g1100 955 Gene3D - 332 430 - -
Bisa09g1100 955 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 361 432 IPR036097 GO:0000155|GO:0007165
Bisa09g1100 955 ProSiteProfiles Histidine kinase domain profile. 374 648 IPR005467 -
Bisa09g1100 955 MobiDBLite consensus disorder prediction 516 544 - -
Bisa09g1100 955 ProSiteProfiles Response regulatory domain profile. 808 954 IPR001789 GO:0000160
Bisa09g1100 955 MobiDBLite consensus disorder prediction 765 782 - -
Bisa09g1100 955 FunFam Histidine kinase 5 209 344 - -
Bisa09g1100 955 MobiDBLite consensus disorder prediction 722 764 - -
Bisa09g1100 955 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 646 IPR003594 -
Bisa09g1100 955 Coils Coil 88 115 - -
Bisa09g1100 955 CDD REC_hyHK_CKI1_RcsC-like 809 950 - -
Bisa09g1100 955 FunFam Histidine kinase 5 801 955 - -
Bisa09g1100 955 Pfam His Kinase A (phospho-acceptor) domain 369 432 IPR003661 GO:0000155|GO:0007165
Bisa09g1100 955 MobiDBLite consensus disorder prediction 657 677 - -
Bisa09g1100 955 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Bisa09g1100 955 SMART REC_2 807 950 IPR001789 GO:0000160
Bisa09g1100 955 SUPERFAMILY CheY-like 807 955 IPR011006 -
Bisa09g1100 955 PRINTS Bacterial sensor protein C-terminal signature 608 626 IPR004358 GO:0016310|GO:0016772
Bisa09g1100 955 PRINTS Bacterial sensor protein C-terminal signature 573 587 IPR004358 GO:0016310|GO:0016772
Bisa09g1100 955 PRINTS Bacterial sensor protein C-terminal signature 632 645 IPR004358 GO:0016310|GO:0016772
Bisa09g1100 955 SMART HKATPase_4 478 648 IPR003594 -
Bisa09g1100 955 CDD HATPase_EvgS-ArcB-TorS-like 483 645 - -
Bisa09g1100 955 Gene3D - 804 955 - -
Bisa09g1100 955 FunFam Putative histidine kinase 5 355 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1100 Bisa-ChrBisa09 15998615 16003238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1100 1 955 Histidine Kinase Gene Family AT5G10720 58.504 0.0 1093
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa09g1100 HATPase_c 1.8e-28 CL0025