Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1087 ATGTTGACAACTGGGCTAGCCCAATTGTGGGCCCATTCTCAAGTCTCAATTTGGTTAGGCTATCATATGGGCCTGGGAGATGAGTCCAAATTCACGCCACAGGACATGATTAAAAAAAAGTGCGCCATTGAAACTCCTTATGTTTTCCCCATGGCGGATGTGATGGTGATGAACGAGATTGAGGCAACAGCGTCACGGCTCGGAGTAGATCTTACTTCCGTCGATCTTGGTTCCATTCACCTGCCGCCGGACAATGACTTGGGCATCTTGAGTGATGATGAGGATATTTACCAAGAGGAAAATCTTGAGTTTGACTCTGGATTTGGCAACATAATAGTCGTGGATAATCTCCCAGTTGTTCCTCGGGAAAAGTTTGAGAAGCTTGAAAGTGTAATTCGTAAGATTTATAGTCAGATTGGTGTTATTAAGGAGGATGGCCTGTGGATGCCTGTTGATCCTGATTCCGAGAAAAGTTTAGGTTACTGCTTTATCGAGTATAATACTCCACAGGAAGCTGAACTTGCTAAAGAGAAGACACATGGATACAAGTTGGATCGTGCACATGTTTTTTCAGTGAACATGTTTGATGACTTTGACAAATTTCTGAAAGTTCCAAATATGTGGGCTCCCCCTGAAACAAAGCCATATACTCCAGGGGAAAATCTTCAACACTGGCTTACTGATGCAAAAGCTCGAGACCAGTTTGTAATTCGTGCTGGTTCTGATACTGAGGTTTTATGGAATGATGCTAGACATTTGAAGCCTGATCCTGTTTATAAGCGTACTTTTTGGACTGAGAGCTTTGTGCAATGGTCTCCTTTGGGCACATACTTGGCAACAGTTCACAGGCAAGGGGCAGCTGTTTGGGGAGGTGCTGCAGCCTTCAATCGTCTTATGCGTTACGCACATCCTCAGGTGAAACTTATTGATTTTTCTCCTGGTGAGAAGTATTTGGTAACTTACAGCAGCCAGGAACCTAGCAATCCTCGGGATGCTAATAGGGTTGTCATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGAGATTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTACTGGAGGTGTCACAGGGGTCTCGTGGCCTGTTTTCAAATGGGGCAGCGGGAGAGATGATAAATACTTTGCCAGAATGGGGAAAAATATCATCTCTGTATATGAGACAGAGACCTTTTCTCTTGTTGACAAAAAGTCCTTAAAGGTTGAAAATATAATGGATTTTTGCTGGTCTCCAACTGATCCAATTCTTGCTCTGTTTGTACCGGAGATGGGTGGTGGGAACCAGCCTGCTAGGGTAAGTCTGATTCAAATCCCCAGTAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGATTGTAAGATGTACTGGCAAAGCAATGGTGACTACCTTGCTGTTAAAGTAGATCGTTATACTAAAACCAAGAAAAGCACATACACTGGATTTGAGCTTTTCCGTATAAAAGAACGCGACATACCCATTGAAGTACTGGAGCTTGAGAATAAAAATGACAAGATCATTGCATTTGCTTGGGAGCCAAAGGGCCATAGGTTTGCGGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCTTTTACTCTATGCGGACAACTCCGAACACTGGCCGGGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTCTATTTTGGTCACCTTCAGGTCACTACATTGTACTTGCAGGATTGAAAGGCTTCAATGGACAGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCATCGGCTGAACATTTTATGGCAACAGATATTGAATGGGACCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAGATGGAAAACGGGTTCAACATATGGTCTTTCAACGGCAAGCTTCTCTATCGGGTCCCCAAGGATCACTTCTTTCAGTTCTTATGGCGACCGAGGCCACCATCGTTCCTGAGTGCGGAGAAAGAGGAAGAGATTGGAAGGAACTTGAAGAAGTATAGTAAGAAATATGAGGCAGAAGACCAAGATGTGTCATTGCTGCTGAGTGAGCAGGAGCGAGAGAAGCGCAGGATGTTGAAAGAAGAGTGGGACAAGTGGGTCAACGAATGGAAGCGGTTGCATGAACAAGAAAATTTAGAGAGGCTGAATCTCAGGGACGGAGAAGCTAGTGACAAAGAAGAAGAATACGAGGCAAAGGACATTGAGGTTGAGGAAGTGGTGGATGTATCAGAGGAGGTCCTTCCTTTCGAATATGGCCAAGAGTGA 2310 0.4394 MLTTGLAQLWAHSQVSIWLGYHMGLGDESKFTPQDMIKKKCAIETPYVFPMADVMVMNEIEATASRLGVDLTSVDLGSIHLPPDNDLGILSDDEDIYQEENLEFDSGFGNIIVVDNLPVVPREKFEKLESVIRKIYSQIGVIKEDGLWMPVDPDSEKSLGYCFIEYNTPQEAELAKEKTHGYKLDRAHVFSVNMFDDFDKFLKVPNMWAPPETKPYTPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAAAFNRLMRYAHPQVKLIDFSPGEKYLVTYSSQEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWGSGRDDKYFARMGKNIISVYETETFSLVDKKSLKVENIMDFCWSPTDPILALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSFYSMRTTPNTGRVSKLTTLKGKQANALFWSPSGHYIVLAGLKGFNGQLEFYNVDELETMASAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRVPKDHFFQFLWRPRPPSFLSAEKEEEIGRNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKRLHEQENLERLNLRDGEASDKEEEYEAKDIEVEEVVDVSEEVLPFEYGQE 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1087 769 SUPERFAMILY DPP6 N-terminal domain-like 267 643 - -
Bisa09g1087 769 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 98 763 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bisa09g1087 769 FunFam Eukaryotic translation initiation factor 3 subunit B 231 432 - -
Bisa09g1087 769 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 185 IPR000504 GO:0003723
Bisa09g1087 769 Gene3D - 231 492 IPR015943 GO:0005515
Bisa09g1087 769 Gene3D - 493 674 IPR015943 GO:0005515
Bisa09g1087 769 CDD RRM_eIF3B 109 193 IPR034363 -
Bisa09g1087 769 Pfam Eukaryotic translation initiation factor eIF2A 456 656 IPR013979 -
Bisa09g1087 769 SMART rrm1_1 111 193 IPR000504 GO:0003723
Bisa09g1087 769 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 197 IPR000504 GO:0003723
Bisa09g1087 769 FunFam Eukaryotic translation initiation factor 3 subunit B 461 676 - -
Bisa09g1087 769 FunFam Eukaryotic translation initiation factor 3 subunit B 105 204 - -
Bisa09g1087 769 SUPERFAMILY RNA-binding domain, RBD 107 194 IPR035979 GO:0003676
Bisa09g1087 769 PIRSF Transl_init_eIF3b 55 763 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bisa09g1087 769 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 86 760 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bisa09g1087 769 Gene3D - 109 193 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1087 Bisa-ChrBisa09 15839610 15844460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1087 55 762 Eukaryotic Initiation Factors Gene Family AT5G27640 76.305 0.0 1174