Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1008 ATGATGATGGAGGAACCAGCACTCTTTGTCCCTAATCTTCAACTTCCTCATTCGGAATGCTATCCATCACCTGACGATTTCACCGACTTCGACACACTCTCAGCTCAAGCATTCGACATGCCCATTGACGCATTCTCCACCGACCACTTCCGCATGTTCGAGTTCAAAATCCTCAAGTGCGCACGTGGCAGGCCACACGACTGGACCCACTGTCCCTACGCCCATCCCGGCGAGAAGGCTCGCCGGCGAGACCCCCGCAAATTCCACTACTCCGCCACCCCTTGCCCCGACTTCCGCCGCGGCACTTGCCCCAGAGCTGACTCCTGTGACTTCGCTCACGGCGTCTTCGAGTCCTGGCTTCACCCTTCTCGTTACAGGACTCAGCTCTGCAAGGACGCCACCAACTGTCGCCGCCATGTCTGTTTCTTCGCCCACACGCCCCGCCAATTGCGTGTCCTCACTCGTGGGTCGACCTACTCGTCGGACGGGTCGCCCCTGCCTCGCCCTTTCGATTCCTCTGTTTCGTCTCCTACTTCAGTCCTGAACTTCAATGCGGTGAGCGGATTAGTTACTTCAATGCGTAACGTTCAACTCGATTCGCCCCGGACGGGTTCTGGATTTGGTTCGATTGTCCGACCCGGATTTTCCAGCCTTCCGTCAACCCCAACATGGCCGCAATCTGATAAATTAACGGATCGGAGCTTCGAAGAAGAGGCTCCAACAGAGAGAGTGGAATCGGGAAGAGACATTAGAGGTAAGATTTACGCTAAACTCAGCAAGGAAATGTCAAACACGTTTGGGCCAAGCGAGGCGGGTCTTTCAGCTCCGGATTTTGGATGGGTCTTCGAACTTGTGAAGTGA 861 0.5528 MMMEEPALFVPNLQLPHSECYPSPDDFTDFDTLSAQAFDMPIDAFSTDHFRMFEFKILKCARGRPHDWTHCPYAHPGEKARRRDPRKFHYSATPCPDFRRGTCPRADSCDFAHGVFESWLHPSRYRTQLCKDATNCRRHVCFFAHTPRQLRVLTRGSTYSSDGSPLPRPFDSSVSSPTSVLNFNAVSGLVTSMRNVQLDSPRTGSGFGSIVRPGFSSLPSTPTWPQSDKLTDRSFEEEAPTERVESGRDIRGKIYAKLSKEMSNTFGPSEAGLSAPDFGWVFELVK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1008 286 SMART c3hfinal6 89 115 IPR000571 GO:0046872
Bisa09g1008 286 SMART c3hfinal6 124 147 IPR000571 GO:0046872
Bisa09g1008 286 PANTHER UNKEMPT FAMILY MEMBER 40 286 IPR045234 -
Bisa09g1008 286 ProSiteProfiles Zinc finger C3H1-type profile. 90 116 IPR000571 GO:0046872
Bisa09g1008 286 Gene3D - 87 152 - -
Bisa09g1008 286 MobiDBLite consensus disorder prediction 217 247 - -
Bisa09g1008 286 SUPERFAMILY CCCH zinc finger 88 117 IPR036855 GO:0046872
Bisa09g1008 286 MobiDBLite consensus disorder prediction 230 247 - -
Bisa09g1008 286 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 114 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1008 Bisa-ChrBisa09 14789035 14789895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1008 39 228 C2H2 Transcription Factor Family AT5G12850 48.958 2.47e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa09g1008 zf-CCCH 2e-05 CL0537