Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1007 ATGAAAGAGTGCGACACGGAGCCATTCCCGGGTCTTGGGGCTAGCTGGCCTTTTGGTTTGGTTCAGGCTCTTATTATCATGGAGGAATATAGTAACAAGGAGTGTGAAAACACAGGTTCAGGTTCAAGGCCTAATTTCTTGTACTCCTCCACTCAACTTCATGGCGCGAGCGTGGGGAATCATCATCAACCCTCCATTATCACTGCCTTTCATCTGCAATCGGGTGGATCACACTGCTATCCATCCATCAAAACCGAACCCAATACTTTTCACTATCCTTTAACCACCGCAAATCTAATTCATCACACTGAAAACCAACACCAAGCAGGGACACCCACCCAAGCCCCTAATAATGAACTCCAAGCCATTAAAGCTAAAATCATTGCTCATCCTCACTACTCCAACCTTTTGGATGCTTACATCAATTGCCAAAAGGTCGGAGCTCCGCCGGAAGTGCTAGCGCGTCTGACTGCTGCTCGGCAGGAGTTCGAGGCACGGCAGCGATCTATAATTAGATCCACCGAAAGTTGCAAGGACCCTGAACTTGACCAATTCATGGAAGCATACTATGACATGCTGGTGAAGTATGGTGAGGAATTAACAAGGCCAATCCGAGAGGCTATGGATTTCATAAACAATATTGAAACTCAGCTCAATCAGCTTTGCGATTCGCCCCTCCGCATCTTCTGTGAAGGCAAAGGCGAGGGCGTTGATTCATCGGAAGAAGATCAAGACAACAACAGTGGAGGCGAAACAGAAGTGCCTGAAATTGATCCCAGAATTGAAGACCGTGAGCTCAAGAACCAGTTGCTGAGGAAGTACAGTGGCTACTTAAGTAGCCTTAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGAAAACTTCCTAAAGACGCCAGGCAAAAGCTCCTCAACTGGTGGGAATTACACTACAAATGGCCCTATCCTTCGGAATCAGAGAAGGTGGCGCTGGCAGAATCAACAGGGCTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGCGACACTGGAAGCCATCAGAGGACATGCAGTTTATGGTGATGGATGGGCTGCATCCACACAACCCCACTCTCTATATGGATCCTCACTACATCTCTGACCCTCATCACTACCGTCTAGGGCCATGA 1155 0.4719 MKECDTEPFPGLGASWPFGLVQALIIMEEYSNKECENTGSGSRPNFLYSSTQLHGASVGNHHQPSIITAFHLQSGGSHCYPSIKTEPNTFHYPLTTANLIHHTENQHQAGTPTQAPNNELQAIKAKIIAHPHYSNLLDAYINCQKVGAPPEVLARLTAARQEFEARQRSIIRSTESCKDPELDQFMEAYYDMLVKYGEELTRPIREAMDFINNIETQLNQLCDSPLRIFCEGKGEGVDSSEEDQDNNSGGETEVPEIDPRIEDRELKNQLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPHNPTLYMDPHYISDPHHYRLGP 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1007 384 SMART HOX_1 287 352 IPR001356 GO:0003677
Bisa09g1007 384 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 121 354 - -
Bisa09g1007 384 ProSitePatterns 'Homeobox' domain signature. 323 346 IPR017970 GO:0000981|GO:0006355
Bisa09g1007 384 SMART ELK_2 265 286 IPR005539 GO:0003677
Bisa09g1007 384 Gene3D - 290 352 - -
Bisa09g1007 384 SUPERFAMILY Homeodomain-like 286 361 IPR009057 -
Bisa09g1007 384 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Bisa09g1007 384 CDD homeodomain 297 349 IPR001356 GO:0003677
Bisa09g1007 384 SMART KNOX1_2 121 165 IPR005540 GO:0003677|GO:0005634
Bisa09g1007 384 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Bisa09g1007 384 MobiDBLite consensus disorder prediction 233 262 - -
Bisa09g1007 384 Pfam ELK domain 265 286 IPR005539 GO:0003677
Bisa09g1007 384 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Bisa09g1007 384 FunFam Homeobox protein knotted-1-like 2 290 352 - -
Bisa09g1007 384 Pfam KNOX1 domain 122 164 IPR005540 GO:0003677|GO:0005634
Bisa09g1007 384 SMART KNOX2_2 172 223 IPR005541 GO:0003677|GO:0005634
Bisa09g1007 384 Pfam KNOX2 domain 177 222 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1007 Bisa-ChrBisa09 14745955 14750040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1007 81 384 Homeobox Transcription Factor Family AT4G08150 69.132 1.81e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa09g1007 KNOX2 4.4e-24 No_clan