Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0959 ATGGATGACAGCTTTTCTGATATTCTTGAGGACAAAGACTTTGGGGGAGACGACCTCTTTGCCCTTTTGGAGAGCCTTGAGAACTTCTCCGACTTTCCTCCCATTCTTAGCCCTAAGGATAACGAGGAAACGTCAAGGTTGGTGTCCCAAAAGTCAACCTCTTCAAGTGCTCTTCAAGAGTCAGAAGAAACTGAGCTTGAAGCTTCGCCCAAAAGCAAGAAACAGAAGCTCACGCCGACCACTTCCTCGGAGGATCCAAACCCAGATGGCCAACAAAGGATATCTCACATTACTGTGGAGCGCAACCGAAGAAAGCAAATGAATGAGCACTTGTCCGTCTTGAGGTCACTTATGCCTAACTTTTATGTCAAACGAGGAGACCAAGCATCAATAATTGGAGGAGTGGTAGATTACATAAGCGAGTTGCAGCAGGTTCTACATTCTCTGGAAGCCAAGAAGCAAAGAAAGGTATACAGTGATGTGTTGAGCCCTAGGCTAGTCTCAAGTCCAAGGCCTCCTTCGGCTCTTAGTCCTAGAAAACCACCTGTGAGTCCCAGACTCAGCTTGCCCATTAGTCCCAGGACTCCACAACCAGGCAGCCCTTACAAGCCAAGGTTGCAGCAGCAACTAGGTTACCTTTCGCCTACCATCTCCACCTCTCTCGAACCATCTCCTACATCTTCTGCTGCTTCTTCCTCCATTAACGATAACATCAACGAGCTTGTTGCCAATTCCAAGTCTGCTGTGGCTGATGTGGAGGTCAAGTTTTCAGGGCCACACCTTCTTTTGAAAACTGTTTCTCCAAGAATTCCAGGACAAGCTCTGAAGATCATGTCAACACTTGAAGACCTGGCGCTTGAAATCCTCCATGTCAGCATCAGCACTAATGATGAAACCATGCTTAACTCATTTACTATTAAGTTTGATTTTGTTAATAGATTGGAATTGAATGTCGACTCAGTGCCGAAGAACTTGCTCAACAAATACAGCAGACATTTTGCTAAAATCTCCTAA 1014 0.4576 MDDSFSDILEDKDFGGDDLFALLESLENFSDFPPILSPKDNEETSRLVSQKSTSSSALQESEETELEASPKSKKQKLTPTTSSEDPNPDGQQRISHITVERNRRKQMNEHLSVLRSLMPNFYVKRGDQASIIGGVVDYISELQQVLHSLEAKKQRKVYSDVLSPRLVSSPRPPSALSPRKPPVSPRLSLPISPRTPQPGSPYKPRLQQQLGYLSPTISTSLEPSPTSSAASSSINDNINELVANSKSAVADVEVKFSGPHLLLKTVSPRIPGQALKIMSTLEDLALEILHVSISTNDETMLNSFTIKFDFVNRLELNVDSVPKNLLNKYSRHFAKIS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0959 337 CDD bHLH_AtFAMA_like 94 165 - -
Bisa09g0959 337 MobiDBLite consensus disorder prediction 73 94 - -
Bisa09g0959 337 PANTHER TRANSCRIPTION FACTOR FAMA 15 314 IPR044283 GO:0003700|GO:0010052
Bisa09g0959 337 MobiDBLite consensus disorder prediction 174 200 - -
Bisa09g0959 337 Gene3D - 83 156 IPR036638 GO:0046983
Bisa09g0959 337 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Bisa09g0959 337 SMART finulus 97 148 IPR011598 GO:0046983
Bisa09g0959 337 MobiDBLite consensus disorder prediction 31 94 - -
Bisa09g0959 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Bisa09g0959 337 FunFam Transcription factor SPEECHLESS 83 157 - -
Bisa09g0959 337 MobiDBLite consensus disorder prediction 163 206 - -
Bisa09g0959 337 MobiDBLite consensus disorder prediction 47 63 - -
Bisa09g0959 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 161 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0959 Bisa-ChrBisa09 14003369 14005456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0959 1 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.821 2.34e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa09g0959 HLH 4.1e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0959 09 14003369 14005456 Bisa09g0959 09 14003369 14005456 ECH