Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0901 ATGGGTACCATCAGCGACTACGGAGAGGGCCGATTTTTCGATGCTCAAGAGGAGGTTTTGTCCATCGCTGATGCAAAATTCGATGACACTGACACCCCTGAGACTAATTTTAGTCCTAGCAACGGGATGTGGAATGGTTTGGAATATGAACTGTGGATTCGGAGCCCAATGAGTGTTCGGGAGCGTCGGAGTAAGTTCATGAAGTGGATGGGGCTGAGTTCAGGTCGATTTTCCCTTGAAAATTCAGTAGATGTATGTAGTCTTGAGCGGGAAGAAGATATGAACAGAATCAAAGATGGTAGTGGGAACGTGACTGTACCCTCCGATTCTGTGTCTGATTCTGAGGAGATGTTTTATTCACTGAGGTCATCAATATCTCGTTTGTCTACTGTTAGTTCTTCGGATGAGTTTGGTACAGTGGAGAACCTGGCATGCAATGATGGGAATTTAGACACGAAAATGGGGCTTAATTTGGATCAGGCGGACCAGCATGGGAGGACGAGTGATGGTGCAGAGGTTGTTTCAGATCAATTGGTGTATGCAGGGCAGCCTGAGAATTCTGAGAACACATTTGGGGAGTCTTCCTCTTTCCAACATATGAAGAATAAGGAGTATAACAAGATGAATGTTTTTGGTCAGGGTACTAAGAGGGCTAAAGGGGGTTGGTTCAAAAAATTACGTTCAATAACATGCATGAATGATAGGCAAGGTGATGGGAGACAAGAAGGAAGTTGTGCATTCTCGGGGTGTAGGATTCAGAGAGTTAAAGTCCGTCATTGTAGGAGACAAAGAAAGGAACTTTCAGCACTTTATATGGGGCAAGATATTCAAGCTCATGAAGGTTCAATTTTGACCATGAAATTCAGCCATGACGGCCAGTATCTTGCCAGTGCAGGGGAAGACAGGATAGTGCGATTGTGGCAAGTAGTGGAAGATGAGAGATGTAATGAAACTGACATCCCAGAAATTGACTCATCCTGCGTATACTTTACAGTGAATAATCTCTCTGAATTGACACCCTTATTTATTGATAAGGAAAAAATGAGCAGACTGAAGAGTCTGAAGAAAACATCAGATTCAGCTTGCATCATTTTTCCTCCTAAGGTCTTTCGATTGTTGGAGAAACCATTGCATGAATTCCATGGGCATAGCGGTGAAATTTTGGATCTCTCGTGGTCAGAGAATAATTATCTGCTGTCATCTTCAGTCGACAATACTGTTCGTCTATGGAGAGTGGGGTATGACCATTGCATCAAAGTTTTCTCACACAGTAATTATGTGACTTGCGTACAATTCAATCCTACGGATGATAATTATTTCATTAGCGGATCTATAGATGGTAAGGTGCGCATCTGGACAATCCCTGATTGTCATGTTGTTGATTGGACTGATATCAGAGAAATTGTGACTGCAGTGTGTTACCGACCTGATGGGCAGGGGGGGATCATCGGCTCCATTACAGGAAATTGTTGGTTCTATGATGTCTCAGAGAAACGCTTGCAGTTGGATTCCCAATTATGTTTAGCTGGTAAAAAGAAAAATCCAGGCAGAGGGATAACTGGGTTTCAGTTTCTCCCTCAAAATTCTGGCAAAGTTCTGGTTACCAGTTCTGATTCAAAAGTCAGAATCCTTGACGGGCTTAATGTGGTTGGCAAATACAAAGGCACTAGTGGAGGGAGACAAATGTCTGCATCATTTACTTCAGATGGGAAACACATTTTATCAGCCTGTGAGGACTCTAATATATATCTATGGAACGTTAGACAGAAAGAGTCTAGTTCCACAAAAGCTAAGCAGATTAGGTCTTGTGAGCGGTTTTATTCAAATGCGACTGTTGCAGTACCATGGTGTGGTTTGAAATCCCAAAATCATGATTATGATTACCAAACGGATGTATTGGATAGGAGATTACCTCAAAGCATACGTCTAAACTTTCCTGCTTCTTTTACTGTCAGCAAGGATGTCTACTTGGAGTCTTTTCCCAAGGGATCCGCAACTTGGCCAGAGGAGAAGCTTCCCATTTCAAGCCCCGAGGCTAAAAAGTCTGCAATGCATAAATCTGAGTACAAGTTCTTGAAATCTTCTTGCAAGAGTACCTCCAGTTCTCATGCATGGGGTCTGGTCATTGTGACTGCGGACTGGGATGGGCGGATAAAGTCATTCTACAATTATGGTTTACCTGCACCGGTTTGA 2193 0.4295 MGTISDYGEGRFFDAQEEVLSIADAKFDDTDTPETNFSPSNGMWNGLEYELWIRSPMSVRERRSKFMKWMGLSSGRFSLENSVDVCSLEREEDMNRIKDGSGNVTVPSDSVSDSEEMFYSLRSSISRLSTVSSSDEFGTVENLACNDGNLDTKMGLNLDQADQHGRTSDGAEVVSDQLVYAGQPENSENTFGESSSFQHMKNKEYNKMNVFGQGTKRAKGGWFKKLRSITCMNDRQGDGRQEGSCAFSGCRIQRVKVRHCRRQRKELSALYMGQDIQAHEGSILTMKFSHDGQYLASAGEDRIVRLWQVVEDERCNETDIPEIDSSCVYFTVNNLSELTPLFIDKEKMSRLKSLKKTSDSACIIFPPKVFRLLEKPLHEFHGHSGEILDLSWSENNYLLSSSVDNTVRLWRVGYDHCIKVFSHSNYVTCVQFNPTDDNYFISGSIDGKVRIWTIPDCHVVDWTDIREIVTAVCYRPDGQGGIIGSITGNCWFYDVSEKRLQLDSQLCLAGKKKNPGRGITGFQFLPQNSGKVLVTSSDSKVRILDGLNVVGKYKGTSGGRQMSASFTSDGKHILSACEDSNIYLWNVRQKESSSTKAKQIRSCERFYSNATVAVPWCGLKSQNHDYDYQTDVLDRRLPQSIRLNFPASFTVSKDVYLESFPKGSATWPEEKLPISSPEAKKSAMHKSEYKFLKSSCKSTSSSHAWGLVIVTADWDGRIKSFYNYGLPAPV 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0901 730 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 412 IPR001680 GO:0005515
Bisa09g0901 730 ProSiteProfiles Trp-Asp (WD) repeats profile. 563 595 IPR001680 GO:0005515
Bisa09g0901 730 PANTHER WD REPEAT DOMAIN 44 9 727 IPR040324 -
Bisa09g0901 730 SMART WD40_4 414 453 IPR001680 GO:0005515
Bisa09g0901 730 SMART WD40_4 373 411 IPR001680 GO:0005515
Bisa09g0901 730 SMART WD40_4 505 545 IPR001680 GO:0005515
Bisa09g0901 730 SMART WD40_4 455 494 IPR001680 GO:0005515
Bisa09g0901 730 SMART WD40_4 546 586 IPR001680 GO:0005515
Bisa09g0901 730 SMART WD40_4 269 308 IPR001680 GO:0005515
Bisa09g0901 730 Gene3D - 215 325 IPR015943 GO:0005515
Bisa09g0901 730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 454 - -
Bisa09g0901 730 Gene3D - 326 457 IPR015943 GO:0005515
Bisa09g0901 730 Gene3D - 458 611 IPR015943 GO:0005515
Bisa09g0901 730 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Bisa09g0901 730 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 454 IPR001680 GO:0005515
Bisa09g0901 730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 412 - -
Bisa09g0901 730 SUPERFAMILY WD40 repeat-like 275 719 IPR036322 GO:0005515
Bisa09g0901 730 Pfam WD domain, G-beta repeat 277 307 IPR001680 GO:0005515
Bisa09g0901 730 Pfam WD domain, G-beta repeat 417 452 IPR001680 GO:0005515
Bisa09g0901 730 Pfam WD domain, G-beta repeat 375 410 IPR001680 GO:0005515
Bisa09g0901 730 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Bisa09g0901 730 PRINTS G protein beta WD-40 repeat signature 398 412 IPR020472 -
Bisa09g0901 730 PRINTS G protein beta WD-40 repeat signature 440 454 IPR020472 -
Bisa09g0901 730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0901 Bisa-ChrBisa09 13077106 13080643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0901 372 583 U-box Gene Family AT2G33340 26.432 2.42e-06 48.9