Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0876 ATGGAACGCCTAATCCGATGGGGACTTGTGGCTTTGAATCAGAATGGGGATTCAATAATCATCTCTTACCTAATGATGGAGGGGGATGAGTATATTCAAGTATCATTAGACAATCATGCTGGAAGTTTCACCAGCTCAAAGCCACCTCAGAACCCCAAAAAGAAGAAGAACATGATAGCAAACAAGAGGAGGTTTAGTGATGAACAAATAAGATCACTTGAGTGCATATTTGAATCAGAGTCAAAGCTTGAGCCAAGGAAGAAGTTACAACTAGCAAGAGAGCTCGGGCTGCAGCCTCGCCAAGTTTCCATATGGTTCCAGAACAGAAGAGCCAGATGGAAATCTAAAAGGCTAGAGCAAGAGTACAGGAAACTCAGAGATGAGTATGACAATTTAGCATCTATGTTTGAGTCCATAAAGAAAGAGAAGGAGTCCTTGCAAGTTGAGGTACAAAAGCTAAAAAATTTAATGGAGACATGTCATGATGGTAAAAGGGAAAGCAGGTTTGGCAAGGACAATAGCACAGAGGATGGTGCTTCAGGCAGCGGACACAGCTATTGGAGGAATGAAGCAAAGCCAAGTTTCTCAAATGAGGGTTCCGAGGATGCCAAGACTGAGGACATAAGAGACTTGGCACCGCTTGAAAAACTGTACAGTGTTGATCCTAGTGGTCTGTTAGATCAGTCTTGCAGCAGTTCTCAATGGTTGGATTTCTGGAATTGA 723 0.4288 MERLIRWGLVALNQNGDSIIISYLMMEGDEYIQVSLDNHAGSFTSSKPPQNPKKKKNMIANKRRFSDEQIRSLECIFESESKLEPRKKLQLARELGLQPRQVSIWFQNRRARWKSKRLEQEYRKLRDEYDNLASMFESIKKEKESLQVEVQKLKNLMETCHDGKRESRFGKDNSTEDGASGSGHSYWRNEAKPSFSNEGSEDAKTEDIRDLAPLEKLYSVDPSGLLDQSCSSSQWLDFWN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0876 240 Pfam Homeodomain 62 114 IPR001356 GO:0003677
Bisa09g0876 240 SUPERFAMILY Homeodomain-like 46 116 IPR009057 -
Bisa09g0876 240 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Bisa09g0876 240 SMART HOX_1 59 120 IPR001356 GO:0003677
Bisa09g0876 240 CDD homeodomain 62 117 IPR001356 GO:0003677
Bisa09g0876 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 189 IPR045224 GO:0003700
Bisa09g0876 240 FunFam Homeobox-leucine zipper protein ATHB-7 41 116 - -
Bisa09g0876 240 Pfam Homeobox associated leucine zipper 116 157 IPR003106 GO:0006355|GO:0043565
Bisa09g0876 240 MobiDBLite consensus disorder prediction 174 194 - -
Bisa09g0876 240 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Bisa09g0876 240 Gene3D - 41 122 - -
Bisa09g0876 240 MobiDBLite consensus disorder prediction 164 208 - -
Bisa09g0876 240 Coils Coil 108 159 - -
Bisa09g0876 240 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Bisa09g0876 240 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0876 Bisa-ChrBisa09 12652804 12654930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0876 25 239 Homeobox Transcription Factor Family AT2G46680 39.464 1.61e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa09g0876 Homeodomain 1.9e-17 CL0123